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B4GALNT4
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.7 nTPM
HPA:20.7 nTPM
GTEx:29.8 nTPM
FANTOM5:35.0 Scaled Tags Per Million
Pig:5.1 nTPM
Mouse:13.6 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.0
2586 Male, age 75, left hemisphere 30.5
2828 Female, age 72, unknown 21.1
2666 Male, age 74, left hemisphere 16.3
1827 Male, age 72, unknown 16.2
2411 Female, age 72, unknown 11.6
2219 Male, age 76, both hemispheres 11.0
1870 Female, age 42, unknown 10.5
1833 Male, age 53, unknown 10.2
1830 Male, age 51, unknown 7.1
2019 Male, age 18, unknown 5.3
Dorsal raphe nucleus
nTPM: 10.9
2047 Male, age 72, unknown 14.1
2298 Female, age 72, unknown 11.0
1828 Male, age 53, unknown 10.3
2016 Female, age 72, unknown 9.7
2750 Male, age 76, both hemispheres 9.2
Inferior colliculus
nTPM: 11.5
2849 Male, age 72, unknown 13.1
1848 Female, age 42, unknown 11.5
2097 Female, age 72, unknown 11.3
1890 Male, age 53, unknown 10.1
Median raphe nucleus
nTPM: 11.1
2220 Male, age 76, midline 11.1
Pedunculopontine tegmental nucleus
nTPM: 6.6
1921 Female, age 85, both hemispheres 12.7
2334 Male, age 80, both hemispheres 7.1
2338 Male, age 61, both hemispheres 0.0
Periaquaductal grey, anterior
nTPM: 20.7
1795 Male, age 51, unknown 21.7
2502 Female, age 75, unknown 20.9
1947 Male, age 18, unknown 19.6
Periaquaductal grey, dorsal
nTPM: 11.0
2464 Female, age 72, unknown 17.2
1840 Male, age 53, unknown 11.7
1831 Male, age 72, unknown 8.1
2850 Male, age 76, both hemispheres 7.0
Periaquaductal grey, lateral
nTPM: 10.5
2053 Male, age 18, unknown 14.1
2140 Male, age 76, both hemispheres 11.7
2272 Male, age 74, both hemispheres 5.6
Pretectal area
nTPM: 12.4
2316 Male, age 76, right hemisphere 16.8
2825 Male, age 18, unknown 16.5
2407 Male, age 75, both hemispheres 15.7
2224 Female, age 72, unknown 14.5
2667 Female, age 75, unknown 13.6
1816 Male, age 51, unknown 13.1
2007 Male, age 72, unknown 11.5
1944 Female, age 72, unknown 10.7
1815 Male, age 53, unknown 9.1
2273 Male, age 74, both hemispheres 7.5
1817 Female, age 42, unknown 7.3
Red nucleus
nTPM: 8.8
2588 Male, age 74, left hemisphere 16.6
2725 Female, age 75, unknown 12.8
2769 Male, age 72, unknown 12.5
2227 Male, age 72, unknown 11.6
2584 Male, age 75, left hemisphere 10.8
2503 Female, age 72, unknown 8.7
1954 Female, age 42, unknown 7.9
2785 Male, age 18, unknown 6.8
1904 Male, age 53, unknown 6.7
2823 Male, age 76, right hemisphere 4.1
1821 Female, age 72, unknown 3.3
1865 Male, age 51, unknown 3.3
Substantia nigra
nTPM: 6.6
2665 Male, age 74, both hemispheres 13.5
1941 Male, age 53, unknown 9.5
1851 Male, age 51, unknown 9.3
2699 Male, age 18, unknown 7.3
1889 Female, age 72, unknown 6.7
1916 Female, age 42, unknown 6.6
2583 Male, age 75, right hemisphere 6.1
2590 Female, age 75, unknown 3.7
2241 Male, age 72, unknown 2.4
2409 Female, age 72, unknown 0.7
Superior colliculus
nTPM: 12.4
2664 Male, age 75, both hemispheres 27.9
1796 Male, age 53, unknown 15.6
2261 Male, age 18, unknown 14.6
1839 Male, age 51, unknown 12.6
1895 Male, age 76, right hemisphere 11.1
2087 Female, age 72, unknown 10.4
2587 Male, age 74, left hemisphere 10.4
2668 Female, age 75, unknown 9.4
1995 Male, age 72, unknown 6.3
1913 Female, age 42, unknown 6.1
Ventral tegmental area
nTPM: 9.3
1942 Male, age 51, unknown 16.6
2021 Male, age 53, unknown 11.1
1915 Female, age 42, unknown 8.1
2218 Male, age 76, both hemispheres 7.8
2410 Female, age 72, unknown 6.4
2223 Female, age 72, unknown 5.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 29.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.8
Samples: 139

Max nTPM: 59.7
Min nTPM: 6.2
Std nTPM: 11.0
Median nTPM: 29.0
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 59.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 57.0
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 53.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 52.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 52.6
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 51.6
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 51.3
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 51.0
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 48.2
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 47.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 47.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 35.0
FF:10158-103A5 76 years, female 35.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 5.1
Pig sample Sample description nTPM
Midbrain
nTPM: 4.1
Samples: 4

Max nTPM: 6.1
Min nTPM: 1.6
Sample A Female 1.6
Sample B Female 3.6
Sample C Male 5.2
Sample D Male 6.1
Periaqueductal gray
nTPM: 5.1
Samples: 3

Max nTPM: 6.4
Min nTPM: 4.4
Sample B Female 4.5
Sample C Male 6.4
Sample D Male 4.4
Substantia nigra
nTPM: 3.3
Samples: 4

Max nTPM: 4.8
Min nTPM: 1.3
Sample A Female 4.8
Sample B Female 2.4
Sample C Male 4.6
Sample D Male 1.3
Superior colliculi
nTPM: 3.9
Samples: 4

Max nTPM: 5.4
Min nTPM: 1.7
Sample A Female 4.8
Sample B Female 1.7
Sample C Male 3.6
Sample D Male 5.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.6
Samples: 4

Max nTPM: 14.6
Min nTPM: 12.3
Sample A Male 14.2
Sample B Male 13.4
Sample C Female 14.6
Sample D Female 12.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
71211764 Antisense, RP_050816_02_D08, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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