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TRAPPC6B
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:20.0 nTPM
HPA:20.0 nTPM
GTEx:22.5 nTPM
FANTOM5:83.4 Scaled Tags Per Million
Pig:29.3 nTPM
Mouse:105.3 nTPM
Allen mouse:10.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA047928
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 20.0
Sample id Sample description nTPM
Hippocampus
nTPM: 15.5
1898 Male, age 80, left hemisphere 18.4
1855 Male, age 76, left hemisphere 16.0
1911 Female, age 85, right hemisphere 15.9
2621 Female, age 67, right hemisphere 15.6
2148 Female, age 91, left hemisphere 14.8
2529 Female, age 94, left hemisphere 12.1
Dentate gyrus
nTPM: 16.3
1927 Female, age 91, both hemispheres 23.4
2010 Male, age 76, both hemispheres 16.7
2246 Female, age 85, both hemispheres 16.0
2530 Female, age 94, left hemisphere 14.7
2528 Male, age 74, both hemispheres 13.9
2531 Female, age 67, both hemispheres 13.1
Entorhinal gyrus
nTPM: 16.0
1938 Female, age 85, left hemisphere 21.2
1787 Male, age 76, left hemisphere 17.0
2613 Female, age 94, left hemisphere 16.8
2764 Male, age 80, right hemisphere 16.2
2686 Male, age 75, right hemisphere 12.7
2117 Female, age 91, right hemisphere 12.5
Hippocampus, CA1
nTPM: 18.6
2749 Male, age 80, left hemisphere 30.0
1873 Female, age 85, both hemispheres 18.9
2045 Male, age 76, both hemispheres 17.3
2527 Male, age 74, both hemispheres 14.3
2082 Female, age 91, right hemisphere 12.5
Hippocampus, CA2
nTPM: 16.3
1892 Male, age 76, both hemispheres 22.9
1963 Male, age 80, left hemisphere 18.9
1940 Female, age 85, left hemisphere 15.6
2437 Female, age 94, left hemisphere 13.7
2249 Male, age 74, both hemispheres 13.4
2113 Female, age 91, right hemisphere 13.1
Hippocampus, CA3
nTPM: 19.3
2137 Male, age 80, left hemisphere 29.7
1867 Male, age 76, both hemispheres 21.6
2436 Male, age 74, both hemispheres 19.6
2620 Female, age 94, left hemisphere 16.8
1891 Female, age 85, both hemispheres 15.8
2861 Female, age 67, both hemispheres 12.4
Parahippocampal cortex
nTPM: 16.7
1850 Male, age 80, both hemispheres 20.6
1933 Female, age 85, both hemispheres 19.0
2693 Female, age 94, both hemispheres 18.8
1990 Female, age 91, right hemisphere 17.5
2250 Female, age 67, right hemisphere 17.3
2245 Female, age 91, both hemispheres 16.9
2532 Female, age 72, left hemisphere 16.1
2018 Male, age 76, both hemispheres 14.9
2692 Male, age 74, both hemispheres 13.4
2622 Female, age 67, right hemisphere 12.8
Perirhinal gyrus
nTPM: 20.0
1847 Female, age 91, left hemisphere 22.7
1841 Female, age 85, right hemisphere 20.0
1794 Male, age 80, right hemisphere 19.9
2521 Female, age 94, right hemisphere 18.9
2848 Male, age 76, right hemisphere 18.5
Subiculum
nTPM: 15.2
1901 Male, age 80, both hemispheres 20.7
1977 Female, age 85, both hemispheres 16.2
2042 Male, age 76, both hemispheres 15.4
2438 Female, age 94, left hemisphere 15.0
2619 Male, age 74, both hemispheres 12.3
2729 Female, age 91, right hemisphere 11.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 22.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 22.5
Samples: 197

Max nTPM: 45.7
Min nTPM: 8.9
Std nTPM: 8.8
Median nTPM: 21.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 45.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 45.3
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 41.5
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 41.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 40.3
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 40.3
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 40.0
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 39.7
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 39.7
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 39.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 39.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 83.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 83.4
FF:10169-103B7 60 years, female 93.1
FF:10153-102I9 76 years, female 73.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 29.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 29.4
Samples: 4

Max nTPM: 34.9
Min nTPM: 24.7
Sample A Female 34.9
Sample B Female 28.2
Sample C Male 29.6
Sample D Male 24.7
Entorhinal cortex
nTPM: 26.3
Samples: 4

Max nTPM: 28.8
Min nTPM: 23.8
Sample A Female 28.8
Sample B Female 27.8
Sample C Male 24.6
Sample D Male 23.8
Subiculum
nTPM: 25.7
Samples: 4

Max nTPM: 30.3
Min nTPM: 23.0
Sample A Female 30.3
Sample B Female 23.0
Sample C Male 25.2
Sample D Male 24.4
Ventral hippocampus
nTPM: 25.0
Samples: 4

Max nTPM: 29.5
Min nTPM: 21.1
Sample A Female 27.4
Sample B Female 21.8
Sample C Male 21.1
Sample D Male 29.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 105.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 105.3
Samples: 4

Max nTPM: 111.8
Min nTPM: 100.8
Sample A Male 102.3
Sample B Male 111.8
Sample C Female 100.8
Sample D Female 106.2
Hippocampal formation
nTPM: 96.2
Samples: 4

Max nTPM: 105.9
Min nTPM: 88.7
Sample A Male 105.9
Sample B Male 95.7
Sample C Female 94.4
Sample D Female 88.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 10.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.0
68637862 Antisense, RP_050126_01_G06, Mouse strain C57BL/6J (56 days, male) 10.0

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The Human Protein Atlas

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