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TRAPPC6B
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:19.1 nTPM
HPA:19.1 nTPM
GTEx:23.5 nTPM
FANTOM5:93.2 Scaled Tags Per Million
Pig:39.6 nTPM
Mouse:109.5 nTPM
Allen mouse:7.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA047928
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 19.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 15.6
2846 Female, age 79, unknown 18.7
2288 Male, age 75, left hemisphere 17.5
1854 Male, age 80, left hemisphere 16.3
1857 Female, age 85, left hemisphere 16.3
2290 Female, age 72, unknown 15.9
1781 Male, age 74, unknown 15.3
2481 Female, age 94, left hemisphere 13.2
2289 Male, age 61, right hemisphere 11.7
Claustrum
nTPM: 17.5
2198 Male, age 80, both hemispheres 20.2
2392 Female, age 94, both hemispheres 19.9
2284 Female, age 91, both hemispheres 18.7
2568 Male, age 61, both hemispheres 18.7
1956 Male, age 74, unknown 18.3
2491 Male, age 75, both hemispheres 16.3
2196 Female, age 79, unknown 16.0
2645 Female, age 72, unknown 15.7
2292 Female, age 85, both hemispheres 13.9
Globus pallidus, externus
nTPM: 11.2
2395 Male, age 75, both hemispheres 14.9
2772 Female, age 79, unknown 11.6
1996 Male, age 80, right hemisphere 11.1
2646 Male, age 61, right hemisphere 9.9
2567 Female, age 72, unknown 8.6
Globus pallidus, internus
nTPM: 11.3
2287 Male, age 75, right hemisphere 14.1
2483 Female, age 94, right hemisphere 12.4
1818 Male, age 74, unknown 11.1
2778 Female, age 91, both hemispheres 11.0
2566 Female, age 72, unknown 10.4
2111 Female, age 85, right hemisphere 10.3
2037 Male, age 80, right hemisphere 9.7
Nucleus accumbens
nTPM: 15.7
1856 Female, age 91, right hemisphere 20.1
1806 Female, age 85, left hemisphere 16.5
1783 Male, age 74, unknown 16.2
2824 Male, age 61, right hemisphere 16.1
2286 Male, age 75, left hemisphere 15.9
2391 Female, age 94, left hemisphere 15.3
2698 Female, age 72, unknown 14.1
2732 Male, age 80, right hemisphere 11.4
Nucleus basalis of Meynert
nTPM: 14.0
2821 Male, age 75, both hemispheres 16.7
2393 Male, age 80, right hemisphere 15.4
2484 Female, age 94, left hemisphere 14.6
2569 Male, age 61, both hemispheres 9.3
Nucleus of the diagonal band
nTPM: 18.7
1812 Female, age 91, both hemispheres 20.7
2775 Male, age 80, right hemisphere 20.1
2195 Female, age 85, both hemispheres 19.8
2029 Male, age 61, right hemisphere 18.0
1979 Male, age 74, unknown 14.7
Olfactory tubercle
nTPM: 19.1
1998 Female, age 91, both hemispheres 20.2
1846 Male, age 80, right hemisphere 19.2
2487 Female, age 94, left hemisphere 18.6
2856 Male, age 75, right hemisphere 18.5
Putamen
nTPM: 15.2
1838 Male, age 80, right hemisphere 19.7
1937 Female, age 91, right hemisphere 17.3
2466 Female, age 79, unknown 17.3
1829 Male, age 74, unknown 16.4
2482 Female, age 94, left hemisphere 13.0
2489 Female, age 72, unknown 11.7
2647 Male, age 75, left hemisphere 11.3
Septal nuclei
nTPM: 16.7
1960 Male, age 74, unknown 22.1
2031 Female, age 72, unknown 20.2
2629 Female, age 94, right hemisphere 17.4
2009 Female, age 91, both hemispheres 16.8
2059 Female, age 85, both hemispheres 13.6
2394 Male, age 61, left hemisphere 13.6
2199 Male, age 80, right hemisphere 12.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 23.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 20.4
Samples: 246

Max nTPM: 60.2
Min nTPM: 6.9
Std nTPM: 8.6
Median nTPM: 18.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 60.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 43.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 41.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 41.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 39.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 38.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 37.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 36.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 36.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 36.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 36.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 23.5
Samples: 246

Max nTPM: 51.3
Min nTPM: 8.4
Std nTPM: 8.1
Median nTPM: 24.0
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 51.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 49.0
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 40.8
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 39.7
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 39.7
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 38.5
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 37.7
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 37.7
GTEX-145LS-0011-R6b-SM-5PNWL 60-69 years, female 36.5
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 36.5
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 36.2
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Brain - Putamen (basal ganglia)
Average nTPM: 20.1
Samples: 205

Max nTPM: 43.3
Min nTPM: 8.5
Std nTPM: 8.1
Median nTPM: 18.3
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 43.3
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 42.7
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 40.0
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 38.7
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 38.4
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 38.0
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 37.4
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 36.3
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 36.0
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 35.3
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 35.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 93.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 87.9
FF:10164-103B2 76 years, female 87.9
Globus pallidus
Scaled Tags Per Million: 58.1
FF:10175-103C4 60 years, female 63.9
FF:10161-103A8 76 years, female 52.3
Nucleus accumbens
Scaled Tags Per Million: 89.2
FF:10037-101F1 23-56 years, mixed 89.2
Putamen
Scaled Tags Per Million: 93.2
FF:10176-103C5 60 years, female 93.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 39.6
Pig sample Sample description nTPM
Caudate
nTPM: 29.3
Samples: 4

Max nTPM: 31.9
Min nTPM: 25.6
Sample A Female 31.9
Sample B Female 25.6
Sample C Male 30.7
Sample D Male 29.1
Putamen
nTPM: 39.6
Samples: 4

Max nTPM: 53.9
Min nTPM: 31.8
Sample A Female 35.7
Sample B Female 31.8
Sample C Male 53.9
Sample D Male 36.9
Septum
nTPM: 31.7
Samples: 4

Max nTPM: 36.1
Min nTPM: 29.3
Sample A Female 36.1
Sample B Female 30.0
Sample C Male 31.4
Sample D Male 29.3
Ventral pallidum
nTPM: 31.6
Samples: 4

Max nTPM: 34.8
Min nTPM: 28.9
Sample A Female 34.8
Sample B Female 32.8
Sample C Male 29.7
Sample D Male 28.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 109.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 100.0
Samples: 4

Max nTPM: 102.2
Min nTPM: 96.4
Sample A Male 101.3
Sample B Male 99.9
Sample C Female 102.2
Sample D Female 96.4
Septum
nTPM: 109.5
Samples: 4

Max nTPM: 123.2
Min nTPM: 100.7
Sample A Male 106.5
Sample B Male 123.2
Sample C Female 107.7
Sample D Female 100.7
Ventral forebrain
nTPM: 102.0
Samples: 4

Max nTPM: 109.2
Min nTPM: 95.0
Sample A Male 103.6
Sample B Male 95.0
Sample C Female 109.2
Sample D Female 100.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 7.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 7.4
68637862 Antisense, RP_050126_01_G06, Mouse strain C57BL/6J (56 days, male) 7.4
Pallidum
Expression energy: 5.9
68637862 Antisense, RP_050126_01_G06, Mouse strain C57BL/6J (56 days, male) 5.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.