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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:50.8 nTPM
HPA:50.8 nTPM
GTEx:47.4 nTPM
FANTOM5:119.7 Scaled Tags Per Million
Pig:90.7 nTPM
Mouse:16.2 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 50.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.4
2666 Male, age 74, left hemisphere 53.5
2828 Female, age 72, unknown 49.3
1830 Male, age 51, unknown 48.4
1870 Female, age 42, unknown 46.9
1833 Male, age 53, unknown 46.7
2019 Male, age 18, unknown 46.4
2219 Male, age 76, both hemispheres 45.1
2586 Male, age 75, left hemisphere 43.8
2411 Female, age 72, unknown 43.1
1827 Male, age 72, unknown 41.0
Dorsal raphe nucleus
nTPM: 43.5
1828 Male, age 53, unknown 45.6
2750 Male, age 76, both hemispheres 44.7
2047 Male, age 72, unknown 44.3
2016 Female, age 72, unknown 42.4
2298 Female, age 72, unknown 40.5
Inferior colliculus
nTPM: 45.1
1890 Male, age 53, unknown 49.9
2849 Male, age 72, unknown 45.7
2097 Female, age 72, unknown 42.5
1848 Female, age 42, unknown 42.4
Median raphe nucleus
nTPM: 43.2
2220 Male, age 76, midline 43.2
Pedunculopontine tegmental nucleus
nTPM: 50.8
2338 Male, age 61, both hemispheres 63.9
2334 Male, age 80, both hemispheres 45.7
1921 Female, age 85, both hemispheres 42.8
Periaquaductal grey, anterior
nTPM: 43.7
1947 Male, age 18, unknown 46.2
1795 Male, age 51, unknown 42.9
2502 Female, age 75, unknown 42.1
Periaquaductal grey, dorsal
nTPM: 45.9
2850 Male, age 76, both hemispheres 53.4
1831 Male, age 72, unknown 46.5
2464 Female, age 72, unknown 43.2
1840 Male, age 53, unknown 40.7
Periaquaductal grey, lateral
nTPM: 45.7
2140 Male, age 76, both hemispheres 49.3
2272 Male, age 74, both hemispheres 45.1
2053 Male, age 18, unknown 42.5
Pretectal area
nTPM: 42.5
1817 Female, age 42, unknown 46.9
2007 Male, age 72, unknown 44.3
1815 Male, age 53, unknown 44.2
2667 Female, age 75, unknown 43.2
1944 Female, age 72, unknown 43.0
2316 Male, age 76, right hemisphere 42.1
2825 Male, age 18, unknown 42.1
2224 Female, age 72, unknown 41.6
1816 Male, age 51, unknown 41.2
2407 Male, age 75, both hemispheres 40.0
2273 Male, age 74, both hemispheres 39.2
Red nucleus
nTPM: 50.3
2769 Male, age 72, unknown 53.2
2823 Male, age 76, right hemisphere 52.8
1954 Female, age 42, unknown 52.5
2227 Male, age 72, unknown 52.4
1865 Male, age 51, unknown 51.8
2588 Male, age 74, left hemisphere 51.3
1904 Male, age 53, unknown 49.4
2503 Female, age 72, unknown 48.8
2725 Female, age 75, unknown 48.4
2584 Male, age 75, left hemisphere 48.2
1821 Female, age 72, unknown 47.6
2785 Male, age 18, unknown 47.3
Substantia nigra
nTPM: 45.8
2699 Male, age 18, unknown 56.1
2665 Male, age 74, both hemispheres 54.7
2409 Female, age 72, unknown 45.9
1851 Male, age 51, unknown 45.6
1889 Female, age 72, unknown 44.3
2590 Female, age 75, unknown 43.5
1916 Female, age 42, unknown 43.2
1941 Male, age 53, unknown 42.7
2583 Male, age 75, right hemisphere 41.5
2241 Male, age 72, unknown 41.0
Superior colliculus
nTPM: 44.0
1913 Female, age 42, unknown 48.2
2668 Female, age 75, unknown 47.9
1995 Male, age 72, unknown 45.3
2087 Female, age 72, unknown 45.3
2587 Male, age 74, left hemisphere 43.9
1839 Male, age 51, unknown 43.6
1895 Male, age 76, right hemisphere 42.6
1796 Male, age 53, unknown 42.1
2664 Male, age 75, both hemispheres 41.3
2261 Male, age 18, unknown 39.8
Ventral tegmental area
nTPM: 45.2
2223 Female, age 72, unknown 47.6
1915 Female, age 42, unknown 46.5
2021 Male, age 53, unknown 46.4
1942 Male, age 51, unknown 44.1
2410 Female, age 72, unknown 43.5
2218 Male, age 76, both hemispheres 43.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 47.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.4
Samples: 139

Max nTPM: 200.0
Min nTPM: 4.9
Std nTPM: 25.7
Median nTPM: 41.0
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 200.0
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 127.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 118.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 113.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 107.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 95.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 90.3
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 85.7
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 85.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 83.3
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 83.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 119.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 119.7
FF:10158-103A5 76 years, female 119.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 90.7
Pig sample Sample description nTPM
Midbrain
nTPM: 38.0
Samples: 4

Max nTPM: 64.2
Min nTPM: 20.3
Sample A Female 64.2
Sample B Female 29.5
Sample C Male 37.8
Sample D Male 20.3
Periaqueductal gray
nTPM: 18.8
Samples: 3

Max nTPM: 22.8
Min nTPM: 14.2
Sample B Female 19.3
Sample C Male 22.8
Sample D Male 14.2
Substantia nigra
nTPM: 68.2
Samples: 4

Max nTPM: 125.0
Min nTPM: 38.8
Sample A Female 53.3
Sample B Female 125.0
Sample C Male 38.8
Sample D Male 55.5
Superior colliculi
nTPM: 90.7
Samples: 4

Max nTPM: 183.3
Min nTPM: 38.8
Sample A Female 100.8
Sample B Female 183.3
Sample C Male 38.8
Sample D Male 40.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.2
Samples: 4

Max nTPM: 18.3
Min nTPM: 12.2
Sample A Male 17.0
Sample B Male 18.3
Sample C Female 17.3
Sample D Female 12.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
68443178 Antisense, RP_050111_01_E05, Mouse strain C57BL/6J (56 days, male) 1.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.