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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:135.4 nTPM
HPA:135.4 nTPM
GTEx:45.2 nTPM
FANTOM5:286.9 Scaled Tags Per Million
Pig:57.2 nTPM
Mouse:130.2 nTPM
Allen mouse:6.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 135.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 127.0
2219 Male, age 76, both hemispheres 142.5
2019 Male, age 18, unknown 140.6
1833 Male, age 53, unknown 129.5
2828 Female, age 72, unknown 126.9
2586 Male, age 75, left hemisphere 125.9
1830 Male, age 51, unknown 125.4
1827 Male, age 72, unknown 122.8
1870 Female, age 42, unknown 122.6
2411 Female, age 72, unknown 119.6
2666 Male, age 74, left hemisphere 113.9
Dorsal raphe nucleus
nTPM: 120.3
2750 Male, age 76, both hemispheres 127.4
2016 Female, age 72, unknown 124.1
1828 Male, age 53, unknown 120.6
2298 Female, age 72, unknown 115.3
2047 Male, age 72, unknown 114.0
Inferior colliculus
nTPM: 128.2
2849 Male, age 72, unknown 135.4
1848 Female, age 42, unknown 129.2
2097 Female, age 72, unknown 125.2
1890 Male, age 53, unknown 123.2
Median raphe nucleus
nTPM: 129.8
2220 Male, age 76, midline 129.8
Pedunculopontine tegmental nucleus
nTPM: 133.9
2338 Male, age 61, both hemispheres 135.7
2334 Male, age 80, both hemispheres 134.4
1921 Female, age 85, both hemispheres 131.5
Periaquaductal grey, anterior
nTPM: 121.7
1795 Male, age 51, unknown 123.7
2502 Female, age 75, unknown 121.0
1947 Male, age 18, unknown 120.4
Periaquaductal grey, dorsal
nTPM: 127.6
2850 Male, age 76, both hemispheres 131.1
2464 Female, age 72, unknown 128.7
1831 Male, age 72, unknown 125.8
1840 Male, age 53, unknown 124.6
Periaquaductal grey, lateral
nTPM: 126.2
2140 Male, age 76, both hemispheres 129.8
2272 Male, age 74, both hemispheres 126.2
2053 Male, age 18, unknown 122.7
Pretectal area
nTPM: 135.4
1817 Female, age 42, unknown 143.5
2007 Male, age 72, unknown 141.8
1815 Male, age 53, unknown 139.6
2316 Male, age 76, right hemisphere 138.6
2667 Female, age 75, unknown 137.3
1816 Male, age 51, unknown 137.2
2224 Female, age 72, unknown 134.5
2273 Male, age 74, both hemispheres 134.3
1944 Female, age 72, unknown 130.9
2407 Male, age 75, both hemispheres 129.0
2825 Male, age 18, unknown 122.7
Red nucleus
nTPM: 129.6
2785 Male, age 18, unknown 140.3
2725 Female, age 75, unknown 133.1
1865 Male, age 51, unknown 132.5
1954 Female, age 42, unknown 131.4
2823 Male, age 76, right hemisphere 130.6
1904 Male, age 53, unknown 130.5
2588 Male, age 74, left hemisphere 129.8
2503 Female, age 72, unknown 128.7
2227 Male, age 72, unknown 127.8
1821 Female, age 72, unknown 127.1
2769 Male, age 72, unknown 126.9
2584 Male, age 75, left hemisphere 116.3
Substantia nigra
nTPM: 117.5
2583 Male, age 75, right hemisphere 125.9
1889 Female, age 72, unknown 125.4
2699 Male, age 18, unknown 119.9
1941 Male, age 53, unknown 117.7
2590 Female, age 75, unknown 117.6
2409 Female, age 72, unknown 117.0
2241 Male, age 72, unknown 113.5
2665 Male, age 74, both hemispheres 113.3
1851 Male, age 51, unknown 112.4
1916 Female, age 42, unknown 112.0
Superior colliculus
nTPM: 128.2
1995 Male, age 72, unknown 138.7
1913 Female, age 42, unknown 135.7
1895 Male, age 76, right hemisphere 135.3
2087 Female, age 72, unknown 129.8
1839 Male, age 51, unknown 127.6
1796 Male, age 53, unknown 126.4
2587 Male, age 74, left hemisphere 123.4
2668 Female, age 75, unknown 123.0
2664 Male, age 75, both hemispheres 122.0
2261 Male, age 18, unknown 120.0
Ventral tegmental area
nTPM: 123.4
2218 Male, age 76, both hemispheres 132.7
2223 Female, age 72, unknown 129.6
1942 Male, age 51, unknown 123.4
2021 Male, age 53, unknown 122.6
2410 Female, age 72, unknown 119.6
1915 Female, age 42, unknown 112.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.2
Samples: 139

Max nTPM: 122.7
Min nTPM: 20.4
Std nTPM: 18.6
Median nTPM: 40.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 122.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 115.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 108.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 105.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 104.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 98.3
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 96.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 85.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 74.5
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 70.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 69.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 286.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 286.9
FF:10158-103A5 76 years, female 286.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 57.2
Pig sample Sample description nTPM
Midbrain
nTPM: 55.5
Samples: 4

Max nTPM: 106.4
Min nTPM: 26.4
Sample A Female 26.4
Sample B Female 34.1
Sample C Male 106.4
Sample D Male 55.0
Periaqueductal gray
nTPM: 35.6
Samples: 3

Max nTPM: 39.6
Min nTPM: 32.6
Sample B Female 39.6
Sample C Male 34.6
Sample D Male 32.6
Substantia nigra
nTPM: 27.5
Samples: 4

Max nTPM: 30.8
Min nTPM: 22.0
Sample A Female 30.8
Sample B Female 22.0
Sample C Male 28.1
Sample D Male 28.9
Superior colliculi
nTPM: 57.2
Samples: 4

Max nTPM: 83.4
Min nTPM: 30.6
Sample A Female 52.5
Sample B Female 30.6
Sample C Male 83.4
Sample D Male 62.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 130.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 130.2
Samples: 4

Max nTPM: 136.1
Min nTPM: 124.6
Sample A Male 126.8
Sample B Male 133.4
Sample C Female 136.1
Sample D Female 124.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.2
77866868 Antisense, RP_070129_01_E11, Mouse strain C57BL/6J (56 days, male) 8.0
574 Antisense, RP_Baylor_103392, Mouse strain C57BL/6J (56 days, male) 4.3
573 Antisense, RP_Baylor_103392, Mouse strain C57BL/6J (56 days, male) 1.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.