ABOUTMENU
HELP
NEWS
RESP18
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.8 nTPM
HPA:14.8 nTPM
GTEx:47.8 nTPM
FANTOM5:40.0 Scaled Tags Per Million
Pig:194.0 nTPM
Mouse:499.6 nTPM
Allen mouse:17.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 14.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 12.9
1857 Female, age 85, left hemisphere 20.2
1854 Male, age 80, left hemisphere 18.5
2290 Female, age 72, unknown 15.6
2289 Male, age 61, right hemisphere 14.7
2846 Female, age 79, unknown 9.4
1781 Male, age 74, unknown 9.2
2481 Female, age 94, left hemisphere 8.6
2288 Male, age 75, left hemisphere 7.0
Claustrum
nTPM: 2.6
2196 Female, age 79, unknown 7.8
2568 Male, age 61, both hemispheres 3.0
2198 Male, age 80, both hemispheres 2.6
2392 Female, age 94, both hemispheres 2.5
2284 Female, age 91, both hemispheres 2.0
2645 Female, age 72, unknown 1.7
2491 Male, age 75, both hemispheres 1.5
1956 Male, age 74, unknown 1.3
2292 Female, age 85, both hemispheres 1.2
Globus pallidus, externus
nTPM: 4.1
1996 Male, age 80, right hemisphere 5.8
2567 Female, age 72, unknown 5.0
2772 Female, age 79, unknown 4.3
2646 Male, age 61, right hemisphere 2.8
2395 Male, age 75, both hemispheres 2.5
Globus pallidus, internus
nTPM: 4.0
2483 Female, age 94, right hemisphere 8.5
2037 Male, age 80, right hemisphere 5.5
2566 Female, age 72, unknown 4.0
1818 Male, age 74, unknown 3.6
2287 Male, age 75, right hemisphere 2.3
2778 Female, age 91, both hemispheres 2.2
2111 Female, age 85, right hemisphere 2.0
Nucleus accumbens
nTPM: 14.8
2824 Male, age 61, right hemisphere 26.3
1806 Female, age 85, left hemisphere 21.9
1856 Female, age 91, right hemisphere 18.2
1783 Male, age 74, unknown 16.2
2698 Female, age 72, unknown 16.1
2286 Male, age 75, left hemisphere 9.7
2391 Female, age 94, left hemisphere 6.8
2732 Male, age 80, right hemisphere 3.6
Nucleus basalis of Meynert
nTPM: 6.2
2393 Male, age 80, right hemisphere 9.4
2484 Female, age 94, left hemisphere 6.5
2821 Male, age 75, both hemispheres 5.1
2569 Male, age 61, both hemispheres 3.9
Nucleus of the diagonal band
nTPM: 2.7
1979 Male, age 74, unknown 5.5
1812 Female, age 91, both hemispheres 2.5
2775 Male, age 80, right hemisphere 2.2
2195 Female, age 85, both hemispheres 1.8
2029 Male, age 61, right hemisphere 1.4
Olfactory tubercle
nTPM: 1.5
1846 Male, age 80, right hemisphere 1.7
2487 Female, age 94, left hemisphere 1.6
1998 Female, age 91, both hemispheres 1.5
2856 Male, age 75, right hemisphere 1.3
Putamen
nTPM: 11.0
1838 Male, age 80, right hemisphere 25.0
2482 Female, age 94, left hemisphere 12.2
1937 Female, age 91, right hemisphere 12.1
2466 Female, age 79, unknown 8.5
2489 Female, age 72, unknown 6.9
1829 Male, age 74, unknown 6.7
2647 Male, age 75, left hemisphere 5.7
Septal nuclei
nTPM: 3.0
2394 Male, age 61, left hemisphere 7.9
2199 Male, age 80, right hemisphere 3.9
1960 Male, age 74, unknown 2.4
2059 Female, age 85, both hemispheres 2.4
2009 Female, age 91, both hemispheres 1.9
2629 Female, age 94, right hemisphere 1.5
2031 Female, age 72, unknown 1.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 47.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 31.5
Samples: 246

Max nTPM: 181.7
Min nTPM: 0.1
Std nTPM: 24.0
Median nTPM: 28.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 181.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 116.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 96.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 94.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 92.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 90.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 84.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 81.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 81.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 79.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 78.8
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 47.8
Samples: 246

Max nTPM: 171.1
Min nTPM: 0.0
Std nTPM: 31.7
Median nTPM: 42.4
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 171.1
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 153.3
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 150.1
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 122.1
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 117.3
GTEX-12ZZY-0011-R6b-SM-5EGLA 60-69 years, male 114.4
GTEX-ZE9C-0011-R6a-SM-4WWCW 60-69 years, male 112.4
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 111.3
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 110.8
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 107.8
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 106.3
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 33.3
Samples: 205

Max nTPM: 142.8
Min nTPM: 0.1
Std nTPM: 26.2
Median nTPM: 25.2
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 142.8
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 139.3
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 113.8
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 112.1
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 107.4
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 106.4
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 103.6
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 94.5
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 87.7
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 82.7
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 81.9
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 40.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 40.0
FF:10164-103B2 76 years, female 40.0
Globus pallidus
Scaled Tags Per Million: 9.1
FF:10175-103C4 60 years, female 10.2
FF:10161-103A8 76 years, female 7.9
Nucleus accumbens
Scaled Tags Per Million: 16.3
FF:10037-101F1 23-56 years, mixed 16.3
Putamen
Scaled Tags Per Million: 31.0
FF:10176-103C5 60 years, female 31.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 194.0
Pig sample Sample description nTPM
Caudate
nTPM: 186.7
Samples: 4

Max nTPM: 230.5
Min nTPM: 162.5
Sample A Female 169.0
Sample B Female 184.8
Sample C Male 230.5
Sample D Male 162.5
Putamen
nTPM: 163.4
Samples: 4

Max nTPM: 248.6
Min nTPM: 96.6
Sample A Female 96.6
Sample B Female 141.3
Sample C Male 248.6
Sample D Male 166.9
Septum
nTPM: 193.9
Samples: 4

Max nTPM: 319.1
Min nTPM: 116.1
Sample A Female 187.3
Sample B Female 153.2
Sample C Male 319.1
Sample D Male 116.1
Ventral pallidum
nTPM: 159.1
Samples: 4

Max nTPM: 182.0
Min nTPM: 129.4
Sample A Female 182.0
Sample B Female 161.2
Sample C Male 163.7
Sample D Male 129.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 499.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 81.2
Samples: 4

Max nTPM: 89.9
Min nTPM: 77.1
Sample A Male 77.3
Sample B Male 89.9
Sample C Female 80.4
Sample D Female 77.1
Septum
nTPM: 499.6
Samples: 4

Max nTPM: 559.4
Min nTPM: 453.7
Sample A Male 559.4
Sample B Male 472.7
Sample C Female 453.7
Sample D Female 512.6
Ventral forebrain
nTPM: 164.3
Samples: 4

Max nTPM: 262.8
Min nTPM: 120.2
Sample A Male 120.2
Sample B Male 262.8
Sample C Female 127.8
Sample D Female 146.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 17.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 7.8
71015810 Antisense, RP_050725_02_H08, Mouse strain C57BL/6J (56 days, male) 7.9
68545836 Antisense, RP_050120_01_E12, Mouse strain C57BL/6J (56 days, male) 7.7
Pallidum
Expression energy: 17.4
71015810 Antisense, RP_050725_02_H08, Mouse strain C57BL/6J (56 days, male) 17.5
68545836 Antisense, RP_050120_01_E12, Mouse strain C57BL/6J (56 days, male) 17.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.