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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni
Consensus:64.7 nTPM
HPA:64.7 nTPM
GTEx:83.1 nTPM
FANTOM5:78.7 Scaled Tags Per Million
Pig:96.0 nTPM
Mouse:118.4 nTPM
Allen mouse:1.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA051771Antibody HPA062953Antibody CAB004230
Glial cells MediumNot detectedHigh
Neuronal cells Not detectedNot detectedHigh







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 64.7
Sample id Sample description nTPM
Hippocampus
nTPM: 64.7
2529 Female, age 94, left hemisphere 73.2
2621 Female, age 67, right hemisphere 70.7
2148 Female, age 91, left hemisphere 66.7
1855 Male, age 76, left hemisphere 64.0
1911 Female, age 85, right hemisphere 58.3
1898 Male, age 80, left hemisphere 55.3
Dentate gyrus
nTPM: 60.7
2010 Male, age 76, both hemispheres 65.5
2246 Female, age 85, both hemispheres 65.3
2530 Female, age 94, left hemisphere 64.1
2531 Female, age 67, both hemispheres 60.9
2528 Male, age 74, both hemispheres 54.6
1927 Female, age 91, both hemispheres 53.7
Entorhinal gyrus
nTPM: 60.2
2764 Male, age 80, right hemisphere 64.1
1938 Female, age 85, left hemisphere 63.7
1787 Male, age 76, left hemisphere 62.6
2686 Male, age 75, right hemisphere 58.7
2117 Female, age 91, right hemisphere 58.3
2613 Female, age 94, left hemisphere 54.0
Hippocampus, CA1
nTPM: 61.7
2045 Male, age 76, both hemispheres 65.5
2749 Male, age 80, left hemisphere 63.7
1873 Female, age 85, both hemispheres 61.5
2527 Male, age 74, both hemispheres 61.5
2082 Female, age 91, right hemisphere 56.5
Hippocampus, CA2
nTPM: 59.4
2437 Female, age 94, left hemisphere 67.3
1892 Male, age 76, both hemispheres 62.9
2249 Male, age 74, both hemispheres 59.3
1940 Female, age 85, left hemisphere 58.3
2113 Female, age 91, right hemisphere 56.6
1963 Male, age 80, left hemisphere 52.1
Hippocampus, CA3
nTPM: 63.9
2620 Female, age 94, left hemisphere 75.8
2436 Male, age 74, both hemispheres 64.4
1867 Male, age 76, both hemispheres 62.5
2861 Female, age 67, both hemispheres 62.4
2137 Male, age 80, left hemisphere 62.2
1891 Female, age 85, both hemispheres 56.0
Parahippocampal cortex
nTPM: 61.3
2532 Female, age 72, left hemisphere 66.0
2245 Female, age 91, both hemispheres 65.0
2622 Female, age 67, right hemisphere 63.8
1850 Male, age 80, both hemispheres 63.2
2018 Male, age 76, both hemispheres 63.1
2692 Male, age 74, both hemispheres 62.1
2250 Female, age 67, right hemisphere 59.8
1990 Female, age 91, right hemisphere 57.5
2693 Female, age 94, both hemispheres 56.9
1933 Female, age 85, both hemispheres 55.5
Perirhinal gyrus
nTPM: 63.4
1794 Male, age 80, right hemisphere 72.4
2848 Male, age 76, right hemisphere 64.5
1847 Female, age 91, left hemisphere 64.0
2521 Female, age 94, right hemisphere 58.4
1841 Female, age 85, right hemisphere 57.8
Subiculum
nTPM: 62.0
2438 Female, age 94, left hemisphere 75.1
2619 Male, age 74, both hemispheres 65.5
2042 Male, age 76, both hemispheres 62.2
1977 Female, age 85, both hemispheres 58.1
1901 Male, age 80, both hemispheres 56.4
2729 Female, age 91, right hemisphere 54.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 83.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 83.1
Samples: 197

Max nTPM: 119.5
Min nTPM: 34.7
Std nTPM: 12.8
Median nTPM: 82.5
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 119.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 116.3
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 112.5
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 110.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 109.9
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 109.4
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 109.1
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 106.9
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 105.5
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 104.6
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 104.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 78.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 78.7
FF:10169-103B7 60 years, female 92.0
FF:10153-102I9 76 years, female 65.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 96.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 96.0
Samples: 4

Max nTPM: 103.0
Min nTPM: 88.6
Sample A Female 103.0
Sample B Female 88.6
Sample C Male 96.9
Sample D Male 95.6
Entorhinal cortex
nTPM: 82.3
Samples: 4

Max nTPM: 91.4
Min nTPM: 78.1
Sample A Female 91.4
Sample B Female 80.4
Sample C Male 78.1
Sample D Male 79.4
Subiculum
nTPM: 83.7
Samples: 4

Max nTPM: 91.1
Min nTPM: 79.6
Sample A Female 91.1
Sample B Female 79.9
Sample C Male 84.1
Sample D Male 79.6
Ventral hippocampus
nTPM: 89.8
Samples: 4

Max nTPM: 98.0
Min nTPM: 79.8
Sample A Female 85.4
Sample B Female 79.8
Sample C Male 96.1
Sample D Male 98.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 118.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 108.5
Samples: 4

Max nTPM: 120.5
Min nTPM: 97.5
Sample A Male 111.7
Sample B Male 120.5
Sample C Female 104.1
Sample D Female 97.5
Hippocampal formation
nTPM: 118.4
Samples: 4

Max nTPM: 124.7
Min nTPM: 110.6
Sample A Male 116.0
Sample B Male 124.7
Sample C Female 110.6
Sample D Female 122.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.9
409 Antisense, RP_Baylor_102767, Mouse strain C57BL/6J (56 days, male) 3.8
408 Antisense, RP_Baylor_102767, Mouse strain C57BL/6J (56 days, male) 1.8
410 Sense, RPS_Baylor_36983, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.