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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:64.7 nTPM
HPA:64.7 nTPM
GTEx:79.7 nTPM
FANTOM5:52.5 Scaled Tags Per Million
Pig:96.6 nTPM
Mouse:91.0 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 64.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 60.6
2219 Male, age 76, both hemispheres 64.6
2586 Male, age 75, left hemisphere 64.0
2828 Female, age 72, unknown 62.9
1870 Female, age 42, unknown 62.2
1827 Male, age 72, unknown 61.1
1833 Male, age 53, unknown 61.1
1830 Male, age 51, unknown 59.8
2666 Male, age 74, left hemisphere 59.6
2019 Male, age 18, unknown 59.1
2411 Female, age 72, unknown 52.0
Dorsal raphe nucleus
nTPM: 58.2
1828 Male, age 53, unknown 59.4
2047 Male, age 72, unknown 59.3
2298 Female, age 72, unknown 59.0
2750 Male, age 76, both hemispheres 57.4
2016 Female, age 72, unknown 56.2
Inferior colliculus
nTPM: 61.2
2849 Male, age 72, unknown 67.7
1848 Female, age 42, unknown 62.1
1890 Male, age 53, unknown 60.3
2097 Female, age 72, unknown 54.9
Median raphe nucleus
nTPM: 60.0
2220 Male, age 76, midline 60.0
Pedunculopontine tegmental nucleus
nTPM: 62.5
2338 Male, age 61, both hemispheres 72.1
2334 Male, age 80, both hemispheres 61.6
1921 Female, age 85, both hemispheres 53.7
Periaquaductal grey, anterior
nTPM: 63.9
2502 Female, age 75, unknown 67.3
1947 Male, age 18, unknown 63.9
1795 Male, age 51, unknown 60.6
Periaquaductal grey, dorsal
nTPM: 60.6
2850 Male, age 76, both hemispheres 70.2
1831 Male, age 72, unknown 59.9
1840 Male, age 53, unknown 59.1
2464 Female, age 72, unknown 53.3
Periaquaductal grey, lateral
nTPM: 64.7
2272 Male, age 74, both hemispheres 73.4
2140 Male, age 76, both hemispheres 63.2
2053 Male, age 18, unknown 57.5
Pretectal area
nTPM: 63.6
2407 Male, age 75, both hemispheres 68.7
1817 Female, age 42, unknown 68.4
2667 Female, age 75, unknown 67.3
1815 Male, age 53, unknown 66.0
1816 Male, age 51, unknown 64.5
1944 Female, age 72, unknown 64.2
2273 Male, age 74, both hemispheres 64.2
2007 Male, age 72, unknown 62.3
2825 Male, age 18, unknown 60.8
2224 Female, age 72, unknown 60.7
2316 Male, age 76, right hemisphere 52.5
Red nucleus
nTPM: 62.3
1865 Male, age 51, unknown 65.7
2227 Male, age 72, unknown 64.8
2584 Male, age 75, left hemisphere 64.5
2503 Female, age 72, unknown 64.2
2725 Female, age 75, unknown 64.1
1904 Male, age 53, unknown 62.9
2769 Male, age 72, unknown 62.6
1821 Female, age 72, unknown 61.4
1954 Female, age 42, unknown 60.1
2588 Male, age 74, left hemisphere 60.1
2785 Male, age 18, unknown 59.0
2823 Male, age 76, right hemisphere 58.6
Substantia nigra
nTPM: 61.1
2699 Male, age 18, unknown 71.5
1916 Female, age 42, unknown 65.6
1851 Male, age 51, unknown 64.7
2665 Male, age 74, both hemispheres 63.4
2583 Male, age 75, right hemisphere 61.8
1889 Female, age 72, unknown 61.7
2409 Female, age 72, unknown 58.7
2590 Female, age 75, unknown 57.2
1941 Male, age 53, unknown 57.0
2241 Male, age 72, unknown 49.1
Superior colliculus
nTPM: 62.1
2664 Male, age 75, both hemispheres 66.8
2261 Male, age 18, unknown 66.6
1995 Male, age 72, unknown 66.3
1796 Male, age 53, unknown 63.7
1913 Female, age 42, unknown 62.7
1839 Male, age 51, unknown 61.8
2587 Male, age 74, left hemisphere 61.3
2087 Female, age 72, unknown 58.2
2668 Female, age 75, unknown 57.4
1895 Male, age 76, right hemisphere 56.3
Ventral tegmental area
nTPM: 60.5
2223 Female, age 72, unknown 66.8
2218 Male, age 76, both hemispheres 63.9
2410 Female, age 72, unknown 61.3
2021 Male, age 53, unknown 59.8
1942 Male, age 51, unknown 56.5
1915 Female, age 42, unknown 54.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 79.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 79.7
Samples: 139

Max nTPM: 124.5
Min nTPM: 49.0
Std nTPM: 14.6
Median nTPM: 77.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 124.5
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 120.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 119.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 118.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 113.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 112.0
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 110.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 109.9
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 107.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 106.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 103.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.5
FF:10158-103A5 76 years, female 52.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 96.6
Pig sample Sample description nTPM
Midbrain
nTPM: 95.9
Samples: 4

Max nTPM: 115.6
Min nTPM: 87.1
Sample A Female 115.6
Sample B Female 87.1
Sample C Male 89.8
Sample D Male 91.0
Periaqueductal gray
nTPM: 91.0
Samples: 3

Max nTPM: 99.7
Min nTPM: 82.9
Sample B Female 82.9
Sample C Male 99.7
Sample D Male 90.3
Substantia nigra
nTPM: 91.6
Samples: 4

Max nTPM: 101.4
Min nTPM: 78.1
Sample A Female 78.1
Sample B Female 86.7
Sample C Male 100.2
Sample D Male 101.4
Superior colliculi
nTPM: 96.6
Samples: 4

Max nTPM: 98.9
Min nTPM: 92.3
Sample A Female 92.3
Sample B Female 96.9
Sample C Male 98.1
Sample D Male 98.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 91.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 91.1
Samples: 4

Max nTPM: 97.3
Min nTPM: 87.4
Sample A Male 97.3
Sample B Male 87.4
Sample C Female 90.8
Sample D Female 88.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
409 Antisense, RP_Baylor_102767, Mouse strain C57BL/6J (56 days, male) 0.9
408 Antisense, RP_Baylor_102767, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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