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NAA38
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:142.4 nTPM
HPA:142.4 nTPM
GTEx:161.8 nTPM
FANTOM5:193.2 Scaled Tags Per Million
Pig:39.3 nTPM
Mouse:47.0 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 142.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 141.7
2481 Female, age 94, left hemisphere 146.4
2290 Female, age 72, unknown 145.2
1857 Female, age 85, left hemisphere 145.1
1854 Male, age 80, left hemisphere 142.3
1781 Male, age 74, unknown 140.3
2846 Female, age 79, unknown 139.7
2288 Male, age 75, left hemisphere 137.7
2289 Male, age 61, right hemisphere 136.7
Claustrum
nTPM: 134.2
2198 Male, age 80, both hemispheres 142.1
1956 Male, age 74, unknown 137.1
2491 Male, age 75, both hemispheres 136.9
2196 Female, age 79, unknown 135.5
2568 Male, age 61, both hemispheres 132.8
2284 Female, age 91, both hemispheres 132.7
2292 Female, age 85, both hemispheres 131.3
2392 Female, age 94, both hemispheres 130.0
2645 Female, age 72, unknown 129.2
Globus pallidus, externus
nTPM: 140.8
2772 Female, age 79, unknown 152.1
1996 Male, age 80, right hemisphere 147.5
2395 Male, age 75, both hemispheres 140.2
2646 Male, age 61, right hemisphere 135.1
2567 Female, age 72, unknown 129.0
Globus pallidus, internus
nTPM: 141.8
2287 Male, age 75, right hemisphere 149.9
2483 Female, age 94, right hemisphere 147.3
2037 Male, age 80, right hemisphere 143.7
1818 Male, age 74, unknown 143.0
2778 Female, age 91, both hemispheres 142.5
2566 Female, age 72, unknown 135.9
2111 Female, age 85, right hemisphere 130.0
Nucleus accumbens
nTPM: 142.4
1856 Female, age 91, right hemisphere 154.7
1806 Female, age 85, left hemisphere 147.0
1783 Male, age 74, unknown 146.2
2286 Male, age 75, left hemisphere 144.2
2698 Female, age 72, unknown 141.4
2824 Male, age 61, right hemisphere 139.9
2391 Female, age 94, left hemisphere 134.8
2732 Male, age 80, right hemisphere 131.2
Nucleus basalis of Meynert
nTPM: 138.9
2484 Female, age 94, left hemisphere 144.3
2569 Male, age 61, both hemispheres 138.9
2393 Male, age 80, right hemisphere 137.0
2821 Male, age 75, both hemispheres 135.5
Nucleus of the diagonal band
nTPM: 140.3
2775 Male, age 80, right hemisphere 145.7
1812 Female, age 91, both hemispheres 142.2
2195 Female, age 85, both hemispheres 141.7
1979 Male, age 74, unknown 137.0
2029 Male, age 61, right hemisphere 135.1
Olfactory tubercle
nTPM: 137.4
1846 Male, age 80, right hemisphere 141.6
1998 Female, age 91, both hemispheres 141.6
2487 Female, age 94, left hemisphere 134.3
2856 Male, age 75, right hemisphere 132.0
Putamen
nTPM: 139.3
2466 Female, age 79, unknown 148.0
1937 Female, age 91, right hemisphere 146.9
1838 Male, age 80, right hemisphere 143.4
2482 Female, age 94, left hemisphere 142.6
2647 Male, age 75, left hemisphere 135.4
2489 Female, age 72, unknown 134.0
1829 Male, age 74, unknown 124.4
Septal nuclei
nTPM: 136.2
1960 Male, age 74, unknown 145.1
2031 Female, age 72, unknown 144.8
2009 Female, age 91, both hemispheres 137.2
2059 Female, age 85, both hemispheres 132.7
2629 Female, age 94, right hemisphere 132.4
2394 Male, age 61, left hemisphere 131.4
2199 Male, age 80, right hemisphere 130.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 161.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 142.3
Samples: 246

Max nTPM: 407.3
Min nTPM: 61.9
Std nTPM: 47.9
Median nTPM: 133.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 407.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 331.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 325.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 315.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 314.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 306.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 288.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 280.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 264.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 261.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 240.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 161.8
Samples: 246

Max nTPM: 464.4
Min nTPM: 38.7
Std nTPM: 50.8
Median nTPM: 154.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 464.4
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 401.8
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 321.8
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 315.3
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 287.6
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 285.2
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 283.8
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 281.7
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 261.4
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 255.8
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 252.3
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Brain - Putamen (basal ganglia)
Average nTPM: 160.6
Samples: 205

Max nTPM: 363.4
Min nTPM: 73.7
Std nTPM: 40.9
Median nTPM: 155.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 363.4
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 292.0
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 282.3
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 277.6
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 262.9
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 261.0
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 247.1
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 241.9
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 234.9
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 233.8
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 229.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 193.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 136.5
FF:10164-103B2 76 years, female 136.5
Globus pallidus
Scaled Tags Per Million: 193.2
FF:10175-103C4 60 years, female 274.6
FF:10161-103A8 76 years, female 111.8
Nucleus accumbens
Scaled Tags Per Million: 87.9
FF:10037-101F1 23-56 years, mixed 87.9
Putamen
Scaled Tags Per Million: 190.5
FF:10176-103C5 60 years, female 190.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 39.3
Pig sample Sample description nTPM
Caudate
nTPM: 34.9
Samples: 4

Max nTPM: 42.1
Min nTPM: 28.6
Sample A Female 28.6
Sample B Female 38.5
Sample C Male 42.1
Sample D Male 30.3
Putamen
nTPM: 39.3
Samples: 4

Max nTPM: 59.2
Min nTPM: 30.2
Sample A Female 30.2
Sample B Female 31.9
Sample C Male 59.2
Sample D Male 36.0
Septum
nTPM: 26.9
Samples: 4

Max nTPM: 34.9
Min nTPM: 20.6
Sample A Female 31.2
Sample B Female 34.9
Sample C Male 20.6
Sample D Male 20.8
Ventral pallidum
nTPM: 30.4
Samples: 4

Max nTPM: 37.8
Min nTPM: 23.5
Sample A Female 29.1
Sample B Female 37.8
Sample C Male 23.5
Sample D Male 31.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 47.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 40.2
Samples: 4

Max nTPM: 57.0
Min nTPM: 31.2
Sample A Male 37.6
Sample B Male 57.0
Sample C Female 31.2
Sample D Female 34.8
Septum
nTPM: 47.0
Samples: 4

Max nTPM: 56.7
Min nTPM: 36.9
Sample A Male 36.9
Sample B Male 52.9
Sample C Female 56.7
Sample D Female 41.6
Ventral forebrain
nTPM: 46.9
Samples: 4

Max nTPM: 65.5
Min nTPM: 34.8
Sample A Male 50.7
Sample B Male 36.5
Sample C Female 65.5
Sample D Female 34.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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