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PCP4
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:299.1 nTPM
HPA:299.1 nTPM
GTEx:114.8 nTPM
FANTOM5:43.4 Scaled Tags Per Million
Pig:1393.8 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 299.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 79.8
2019 Male, age 18, unknown 218.4
1827 Male, age 72, unknown 164.5
2828 Female, age 72, unknown 104.2
2219 Male, age 76, both hemispheres 60.3
1870 Female, age 42, unknown 48.8
2411 Female, age 72, unknown 45.7
2586 Male, age 75, left hemisphere 43.9
2666 Male, age 74, left hemisphere 42.3
1830 Male, age 51, unknown 35.5
1833 Male, age 53, unknown 34.5
Dorsal raphe nucleus
nTPM: 32.3
2298 Female, age 72, unknown 43.5
2750 Male, age 76, both hemispheres 34.2
1828 Male, age 53, unknown 32.6
2016 Female, age 72, unknown 27.0
2047 Male, age 72, unknown 23.9
Inferior colliculus
nTPM: 90.4
2097 Female, age 72, unknown 159.0
1890 Male, age 53, unknown 112.4
1848 Female, age 42, unknown 51.3
2849 Male, age 72, unknown 38.8
Median raphe nucleus
nTPM: 26.0
2220 Male, age 76, midline 26.0
Pedunculopontine tegmental nucleus
nTPM: 56.0
1921 Female, age 85, both hemispheres 68.2
2334 Male, age 80, both hemispheres 56.0
2338 Male, age 61, both hemispheres 43.7
Periaquaductal grey, anterior
nTPM: 68.8
1795 Male, age 51, unknown 133.5
2502 Female, age 75, unknown 49.4
1947 Male, age 18, unknown 23.6
Periaquaductal grey, dorsal
nTPM: 74.0
1831 Male, age 72, unknown 165.4
2464 Female, age 72, unknown 47.2
2850 Male, age 76, both hemispheres 42.3
1840 Male, age 53, unknown 41.3
Periaquaductal grey, lateral
nTPM: 60.4
2053 Male, age 18, unknown 82.5
2272 Male, age 74, both hemispheres 56.2
2140 Male, age 76, both hemispheres 42.4
Pretectal area
nTPM: 299.1
1815 Male, age 53, unknown 622.9
1816 Male, age 51, unknown 615.7
1817 Female, age 42, unknown 612.3
1944 Female, age 72, unknown 541.0
2007 Male, age 72, unknown 452.5
2667 Female, age 75, unknown 150.3
2273 Male, age 74, both hemispheres 86.8
2407 Male, age 75, both hemispheres 63.9
2224 Female, age 72, unknown 48.7
2316 Male, age 76, right hemisphere 48.4
2825 Male, age 18, unknown 47.3
Red nucleus
nTPM: 61.0
2785 Male, age 18, unknown 220.8
2584 Male, age 75, left hemisphere 62.6
2588 Male, age 74, left hemisphere 57.7
2503 Female, age 72, unknown 54.2
2823 Male, age 76, right hemisphere 53.5
2725 Female, age 75, unknown 48.5
1904 Male, age 53, unknown 45.1
1954 Female, age 42, unknown 43.0
1821 Female, age 72, unknown 42.9
1865 Male, age 51, unknown 40.1
2769 Male, age 72, unknown 31.9
2227 Male, age 72, unknown 31.8
Substantia nigra
nTPM: 76.6
1889 Female, age 72, unknown 305.4
2665 Male, age 74, both hemispheres 111.3
2409 Female, age 72, unknown 63.0
2583 Male, age 75, right hemisphere 45.7
2590 Female, age 75, unknown 44.5
1916 Female, age 42, unknown 43.4
1851 Male, age 51, unknown 41.3
2241 Male, age 72, unknown 40.1
1941 Male, age 53, unknown 39.0
2699 Male, age 18, unknown 32.7
Superior colliculus
nTPM: 155.9
2087 Female, age 72, unknown 387.8
1913 Female, age 42, unknown 271.7
1995 Male, age 72, unknown 189.7
1796 Male, age 53, unknown 177.2
2261 Male, age 18, unknown 168.9
2668 Female, age 75, unknown 131.1
1895 Male, age 76, right hemisphere 69.1
2664 Male, age 75, both hemispheres 62.4
2587 Male, age 74, left hemisphere 57.2
1839 Male, age 51, unknown 44.4
Ventral tegmental area
nTPM: 37.5
2410 Female, age 72, unknown 44.5
2218 Male, age 76, both hemispheres 43.6
1942 Male, age 51, unknown 37.9
1915 Female, age 42, unknown 37.5
2223 Female, age 72, unknown 30.9
2021 Male, age 53, unknown 30.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 114.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 114.8
Samples: 139

Max nTPM: 697.0
Min nTPM: 7.9
Std nTPM: 100.6
Median nTPM: 85.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 697.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 522.5
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 432.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 421.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 307.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 307.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 302.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 281.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 270.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 266.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 257.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.4
FF:10158-103A5 76 years, female 43.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 1393.8
Pig sample Sample description nTPM
Midbrain
nTPM: 1052.6
Samples: 4

Max nTPM: 3801.4
Min nTPM: 115.0
Sample A Female 115.0
Sample B Female 142.8
Sample C Male 3801.4
Sample D Male 151.3
Periaqueductal gray
nTPM: 103.8
Samples: 3

Max nTPM: 126.8
Min nTPM: 78.5
Sample B Female 78.5
Sample C Male 126.8
Sample D Male 106.1
Substantia nigra
nTPM: 271.9
Samples: 4

Max nTPM: 432.7
Min nTPM: 149.1
Sample A Female 309.3
Sample B Female 196.5
Sample C Male 432.7
Sample D Male 149.1
Superior colliculi
nTPM: 1393.9
Samples: 4

Max nTPM: 3196.9
Min nTPM: 271.3
Sample A Female 271.3
Sample B Female 1061.3
Sample C Male 3196.9
Sample D Male 1045.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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