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SYNDIG1L
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:50.9 nTPM
HPA:50.9 nTPM
GTEx:24.7 nTPM
FANTOM5:1.5 Scaled Tags Per Million
Pig:17.8 nTPM
Mouse:19.7 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 50.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.5
2828 Female, age 72, unknown 54.7
2019 Male, age 18, unknown 30.3
1827 Male, age 72, unknown 27.0
2666 Male, age 74, left hemisphere 15.3
2219 Male, age 76, both hemispheres 15.1
2586 Male, age 75, left hemisphere 10.2
2411 Female, age 72, unknown 9.7
1870 Female, age 42, unknown 8.9
1833 Male, age 53, unknown 7.8
1830 Male, age 51, unknown 5.5
Dorsal raphe nucleus
nTPM: 6.9
2298 Female, age 72, unknown 12.4
2047 Male, age 72, unknown 7.0
1828 Male, age 53, unknown 5.8
2750 Male, age 76, both hemispheres 5.3
2016 Female, age 72, unknown 4.2
Inferior colliculus
nTPM: 28.3
2097 Female, age 72, unknown 47.6
1890 Male, age 53, unknown 33.9
1848 Female, age 42, unknown 21.3
2849 Male, age 72, unknown 10.3
Median raphe nucleus
nTPM: 7.1
2220 Male, age 76, midline 7.1
Pedunculopontine tegmental nucleus
nTPM: 6.9
1921 Female, age 85, both hemispheres 14.2
2338 Male, age 61, both hemispheres 3.4
2334 Male, age 80, both hemispheres 3.1
Periaquaductal grey, anterior
nTPM: 12.4
1795 Male, age 51, unknown 19.4
2502 Female, age 75, unknown 13.5
1947 Male, age 18, unknown 4.4
Periaquaductal grey, dorsal
nTPM: 15.8
1831 Male, age 72, unknown 20.6
2464 Female, age 72, unknown 16.0
2850 Male, age 76, both hemispheres 14.3
1840 Male, age 53, unknown 12.4
Periaquaductal grey, lateral
nTPM: 8.6
2053 Male, age 18, unknown 13.1
2140 Male, age 76, both hemispheres 8.2
2272 Male, age 74, both hemispheres 4.5
Pretectal area
nTPM: 50.9
1816 Male, age 51, unknown 111.4
1944 Female, age 72, unknown 100.8
1817 Female, age 42, unknown 91.4
1815 Male, age 53, unknown 86.4
2007 Male, age 72, unknown 66.6
2667 Female, age 75, unknown 61.8
2316 Male, age 76, right hemisphere 13.4
2273 Male, age 74, both hemispheres 10.7
2825 Male, age 18, unknown 7.5
2407 Male, age 75, both hemispheres 5.6
2224 Female, age 72, unknown 4.9
Red nucleus
nTPM: 18.0
2785 Male, age 18, unknown 34.1
2588 Male, age 74, left hemisphere 30.6
2503 Female, age 72, unknown 26.2
1954 Female, age 42, unknown 21.5
1904 Male, age 53, unknown 19.2
2823 Male, age 76, right hemisphere 17.7
1821 Female, age 72, unknown 13.1
1865 Male, age 51, unknown 12.4
2769 Male, age 72, unknown 12.4
2227 Male, age 72, unknown 11.7
2584 Male, age 75, left hemisphere 10.2
2725 Female, age 75, unknown 7.1
Substantia nigra
nTPM: 17.5
1889 Female, age 72, unknown 69.7
2409 Female, age 72, unknown 23.2
2665 Male, age 74, both hemispheres 19.7
1851 Male, age 51, unknown 11.9
2699 Male, age 18, unknown 11.4
2590 Female, age 75, unknown 10.0
2583 Male, age 75, right hemisphere 9.1
1916 Female, age 42, unknown 7.3
1941 Male, age 53, unknown 7.1
2241 Male, age 72, unknown 5.0
Superior colliculus
nTPM: 33.5
2087 Female, age 72, unknown 100.8
1913 Female, age 42, unknown 44.6
1995 Male, age 72, unknown 43.2
2261 Male, age 18, unknown 35.7
1796 Male, age 53, unknown 33.8
2668 Female, age 75, unknown 27.9
1895 Male, age 76, right hemisphere 18.6
2664 Male, age 75, both hemispheres 11.0
2587 Male, age 74, left hemisphere 10.5
1839 Male, age 51, unknown 8.6
Ventral tegmental area
nTPM: 8.3
2410 Female, age 72, unknown 13.6
1915 Female, age 42, unknown 11.6
1942 Male, age 51, unknown 11.2
2218 Male, age 76, both hemispheres 6.0
2021 Male, age 53, unknown 4.7
2223 Female, age 72, unknown 2.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.7
Samples: 139

Max nTPM: 254.2
Min nTPM: 0.3
Std nTPM: 31.5
Median nTPM: 13.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 254.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 157.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 111.8
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 106.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 100.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 94.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 85.1
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 81.1
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 75.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 65.8
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 57.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.5
FF:10158-103A5 76 years, female 1.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.8
Pig sample Sample description nTPM
Midbrain
nTPM: 17.8
Samples: 4

Max nTPM: 33.8
Min nTPM: 0.6
Sample A Female 0.6
Sample B Female 6.9
Sample C Male 29.8
Sample D Male 33.8
Periaqueductal gray
nTPM: 5.4
Samples: 3

Max nTPM: 6.4
Min nTPM: 4.5
Sample B Female 5.4
Sample C Male 6.4
Sample D Male 4.5
Substantia nigra
nTPM: 10.5
Samples: 4

Max nTPM: 17.0
Min nTPM: 5.2
Sample A Female 12.2
Sample B Female 7.7
Sample C Male 17.0
Sample D Male 5.2
Superior colliculi
nTPM: 15.3
Samples: 4

Max nTPM: 25.1
Min nTPM: 6.7
Sample A Female 25.1
Sample B Female 6.7
Sample C Male 12.8
Sample D Male 16.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 19.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.7
Samples: 4

Max nTPM: 20.8
Min nTPM: 18.4
Sample A Male 19.0
Sample B Male 18.4
Sample C Female 20.5
Sample D Female 20.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
73636032 Antisense, RP_050816_04_C12, Mouse strain C57BL/6J (56 days, male) 0.7
71213653 Antisense, RP_050816_04_C12, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.