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SF3A3
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:22.0 nTPM
HPA:22.0 nTPM
GTEx:13.8 nTPM
FANTOM5:48.2 Scaled Tags Per Million
Pig:20.0 nTPM
Mouse:35.9 nTPM
Allen mouse:15.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA032054Antibody HPA032055
Glial cells HighMedium
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 22.0
Sample id Sample description nTPM
Hippocampus
nTPM: 21.4
1855 Male, age 76, left hemisphere 21.7
1898 Male, age 80, left hemisphere 21.4
2529 Female, age 94, left hemisphere 21.4
2621 Female, age 67, right hemisphere 21.4
1911 Female, age 85, right hemisphere 21.2
2148 Female, age 91, left hemisphere 21.2
Dentate gyrus
nTPM: 21.1
1927 Female, age 91, both hemispheres 21.8
2528 Male, age 74, both hemispheres 21.5
2531 Female, age 67, both hemispheres 21.5
2246 Female, age 85, both hemispheres 20.8
2010 Male, age 76, both hemispheres 20.5
2530 Female, age 94, left hemisphere 20.5
Entorhinal gyrus
nTPM: 21.0
2117 Female, age 91, right hemisphere 21.4
2764 Male, age 80, right hemisphere 21.4
1938 Female, age 85, left hemisphere 21.3
1787 Male, age 76, left hemisphere 21.0
2613 Female, age 94, left hemisphere 20.5
2686 Male, age 75, right hemisphere 20.1
Hippocampus, CA1
nTPM: 21.3
2749 Male, age 80, left hemisphere 22.3
1873 Female, age 85, both hemispheres 21.3
2527 Male, age 74, both hemispheres 21.3
2082 Female, age 91, right hemisphere 21.0
2045 Male, age 76, both hemispheres 20.3
Hippocampus, CA2
nTPM: 21.3
1892 Male, age 76, both hemispheres 22.2
2249 Male, age 74, both hemispheres 21.8
2437 Female, age 94, left hemisphere 21.3
1963 Male, age 80, left hemisphere 21.2
2113 Female, age 91, right hemisphere 21.0
1940 Female, age 85, left hemisphere 20.4
Hippocampus, CA3
nTPM: 21.3
2137 Male, age 80, left hemisphere 22.5
2620 Female, age 94, left hemisphere 22.1
2436 Male, age 74, both hemispheres 21.7
1867 Male, age 76, both hemispheres 21.2
1891 Female, age 85, both hemispheres 20.9
2861 Female, age 67, both hemispheres 19.5
Parahippocampal cortex
nTPM: 21.2
2692 Male, age 74, both hemispheres 22.0
1850 Male, age 80, both hemispheres 21.9
2250 Female, age 67, right hemisphere 21.8
1990 Female, age 91, right hemisphere 21.5
2245 Female, age 91, both hemispheres 21.4
1933 Female, age 85, both hemispheres 21.2
2693 Female, age 94, both hemispheres 21.2
2532 Female, age 72, left hemisphere 20.9
2622 Female, age 67, right hemisphere 20.4
2018 Male, age 76, both hemispheres 20.2
Perirhinal gyrus
nTPM: 22.0
1841 Female, age 85, right hemisphere 22.7
1847 Female, age 91, left hemisphere 22.4
1794 Male, age 80, right hemisphere 21.8
2848 Male, age 76, right hemisphere 21.6
2521 Female, age 94, right hemisphere 21.2
Subiculum
nTPM: 21.1
2438 Female, age 94, left hemisphere 21.7
2619 Male, age 74, both hemispheres 21.7
1901 Male, age 80, both hemispheres 21.1
1977 Female, age 85, both hemispheres 21.0
2729 Female, age 91, right hemisphere 20.7
2042 Male, age 76, both hemispheres 20.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 13.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 13.8
Samples: 197

Max nTPM: 22.7
Min nTPM: 9.8
Std nTPM: 1.8
Median nTPM: 13.5
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 22.7
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 20.5
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 20.4
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 18.9
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 18.8
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 18.2
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 18.1
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 17.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 17.1
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 17.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 16.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 48.2
FF:10153-102I9 76 years, female 53.5
FF:10169-103B7 60 years, female 42.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 20.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 20.0
Samples: 4

Max nTPM: 24.7
Min nTPM: 16.8
Sample A Female 24.7
Sample B Female 19.2
Sample C Male 19.2
Sample D Male 16.8
Entorhinal cortex
nTPM: 15.6
Samples: 4

Max nTPM: 17.9
Min nTPM: 13.7
Sample A Female 16.8
Sample B Female 17.9
Sample C Male 13.7
Sample D Male 14.1
Subiculum
nTPM: 16.4
Samples: 4

Max nTPM: 20.7
Min nTPM: 14.1
Sample A Female 20.7
Sample B Female 15.8
Sample C Male 14.1
Sample D Male 14.9
Ventral hippocampus
nTPM: 17.5
Samples: 4

Max nTPM: 21.0
Min nTPM: 12.7
Sample A Female 17.5
Sample B Female 12.7
Sample C Male 18.8
Sample D Male 21.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 35.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 31.7
Samples: 4

Max nTPM: 32.3
Min nTPM: 31.5
Sample A Male 31.5
Sample B Male 32.3
Sample C Female 31.5
Sample D Female 31.5
Hippocampal formation
nTPM: 35.9
Samples: 4

Max nTPM: 38.2
Min nTPM: 33.0
Sample A Male 38.2
Sample B Male 35.6
Sample C Female 36.6
Sample D Female 33.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 15.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 15.2
392938 Antisense, RP_040804_02_A11, Mouse strain C57BL/6J (56 days, male) 15.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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