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ACSM5
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:5.2 nTPM
HPA:5.2 nTPM
GTEx:4.6 nTPM
FANTOM5:5.1 Scaled Tags Per Million
Pig:2.3 nTPM
Mouse:0.7 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA041435
Glial cells Low
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.6
2481 Female, age 94, left hemisphere 4.7
1854 Male, age 80, left hemisphere 3.8
1857 Female, age 85, left hemisphere 3.7
2288 Male, age 75, left hemisphere 3.6
2289 Male, age 61, right hemisphere 3.5
2846 Female, age 79, unknown 3.3
2290 Female, age 72, unknown 3.1
1781 Male, age 74, unknown 3.0
Claustrum
nTPM: 3.3
2292 Female, age 85, both hemispheres 4.2
2198 Male, age 80, both hemispheres 3.6
2196 Female, age 79, unknown 3.5
2568 Male, age 61, both hemispheres 3.2
1956 Male, age 74, unknown 3.1
2392 Female, age 94, both hemispheres 3.1
2491 Male, age 75, both hemispheres 3.1
2645 Female, age 72, unknown 3.1
2284 Female, age 91, both hemispheres 2.8
Globus pallidus, externus
nTPM: 5.1
2646 Male, age 61, right hemisphere 6.3
1996 Male, age 80, right hemisphere 4.9
2567 Female, age 72, unknown 4.8
2395 Male, age 75, both hemispheres 4.7
2772 Female, age 79, unknown 4.7
Globus pallidus, internus
nTPM: 5.2
1818 Male, age 74, unknown 6.8
2566 Female, age 72, unknown 6.1
2037 Male, age 80, right hemisphere 5.7
2111 Female, age 85, right hemisphere 5.5
2778 Female, age 91, both hemispheres 4.8
2483 Female, age 94, right hemisphere 4.5
2287 Male, age 75, right hemisphere 3.3
Nucleus accumbens
nTPM: 3.8
2824 Male, age 61, right hemisphere 4.4
2732 Male, age 80, right hemisphere 4.1
2698 Female, age 72, unknown 4.0
2286 Male, age 75, left hemisphere 3.8
2391 Female, age 94, left hemisphere 3.7
1806 Female, age 85, left hemisphere 3.5
1783 Male, age 74, unknown 3.4
1856 Female, age 91, right hemisphere 3.4
Nucleus basalis of Meynert
nTPM: 4.7
2569 Male, age 61, both hemispheres 6.8
2393 Male, age 80, right hemisphere 4.4
2484 Female, age 94, left hemisphere 4.0
2821 Male, age 75, both hemispheres 3.7
Nucleus of the diagonal band
nTPM: 3.8
1812 Female, age 91, both hemispheres 4.2
2029 Male, age 61, right hemisphere 4.2
2775 Male, age 80, right hemisphere 3.8
1979 Male, age 74, unknown 3.6
2195 Female, age 85, both hemispheres 3.2
Olfactory tubercle
nTPM: 3.7
1846 Male, age 80, right hemisphere 4.3
2487 Female, age 94, left hemisphere 3.8
1998 Female, age 91, both hemispheres 3.4
2856 Male, age 75, right hemisphere 3.3
Putamen
nTPM: 4.0
2482 Female, age 94, left hemisphere 5.0
1937 Female, age 91, right hemisphere 4.0
1829 Male, age 74, unknown 3.9
2489 Female, age 72, unknown 3.9
2647 Male, age 75, left hemisphere 3.8
1838 Male, age 80, right hemisphere 3.7
2466 Female, age 79, unknown 3.4
Septal nuclei
nTPM: 3.8
2199 Male, age 80, right hemisphere 5.0
2394 Male, age 61, left hemisphere 4.2
2009 Female, age 91, both hemispheres 4.0
2059 Female, age 85, both hemispheres 4.0
2629 Female, age 94, right hemisphere 3.5
1960 Male, age 74, unknown 3.2
2031 Female, age 72, unknown 2.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 4.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 4.2
Samples: 246

Max nTPM: 15.9
Min nTPM: 0.9
Std nTPM: 2.5
Median nTPM: 3.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 15.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 15.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 13.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 13.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 12.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 10.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 10.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 9.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 9.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 9.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 9.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 4.6
Samples: 246

Max nTPM: 16.6
Min nTPM: 0.7
Std nTPM: 2.7
Median nTPM: 3.7
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 16.6
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 16.5
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 15.6
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 13.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 13.2
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 12.9
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 12.3
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 11.9
GTEX-1445S-0011-R6b-SM-5PNUF 60-69 years, male 11.0
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 10.9
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 10.8
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Brain - Putamen (basal ganglia)
Average nTPM: 4.2
Samples: 205

Max nTPM: 24.6
Min nTPM: 0.5
Std nTPM: 2.5
Median nTPM: 3.6
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 24.6
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 13.2
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 10.7
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 10.5
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 10.0
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 9.9
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 9.4
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 9.2
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 9.2
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 8.8
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 8.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 5.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 5.1
FF:10164-103B2 76 years, female 5.1
Globus pallidus
Scaled Tags Per Million: 2.5
FF:10161-103A8 76 years, female 2.7
FF:10175-103C4 60 years, female 2.3
Nucleus accumbens
Scaled Tags Per Million: 4.4
FF:10037-101F1 23-56 years, mixed 4.4
Putamen
Scaled Tags Per Million: 1.0
FF:10176-103C5 60 years, female 1.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 2.3
Pig sample Sample description nTPM
Caudate
nTPM: 2.2
Samples: 4

Max nTPM: 2.5
Min nTPM: 1.9
Sample A Female 2.5
Sample B Female 1.9
Sample C Male 2.3
Sample D Male 2.1
Putamen
nTPM: 2.4
Samples: 4

Max nTPM: 3.5
Min nTPM: 1.5
Sample A Female 3.5
Sample B Female 2.3
Sample C Male 1.5
Sample D Male 2.1
Septum
nTPM: 2.1
Samples: 4

Max nTPM: 2.3
Min nTPM: 1.8
Sample A Female 1.8
Sample B Female 2.0
Sample C Male 2.2
Sample D Male 2.3
Ventral pallidum
nTPM: 2.2
Samples: 4

Max nTPM: 2.5
Min nTPM: 1.9
Sample A Female 2.3
Sample B Female 2.1
Sample C Male 2.5
Sample D Male 1.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.3
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.0
Sample A Male 0.2
Sample B Male 0.4
Sample C Female 0.7
Sample D Female 0.0
Septum
nTPM: 0.7
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.3
Sample A Male 0.3
Sample B Male 0.8
Sample C Female 0.5
Sample D Female 1.3
Ventral forebrain
nTPM: 0.6
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.0
Sample A Male 0.8
Sample B Male 0.0
Sample C Female 0.7
Sample D Female 0.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
71021031 Antisense, RP_050526_02_E07, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
71021031 Antisense, RP_050526_02_E07, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.