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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:48.1 nTPM
HPA:48.1 nTPM
GTEx:46.5 nTPM
FANTOM5:44.0 Scaled Tags Per Million
Pig:61.8 nTPM
Mouse:101.8 nTPM
Allen mouse:9.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003591Antibody HPA003639
Glial cells LowNot detected
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 48.1
Sample id Sample description nTPM
Hippocampus
nTPM: 47.6
2621 Female, age 67, right hemisphere 51.0
2529 Female, age 94, left hemisphere 50.3
1898 Male, age 80, left hemisphere 47.7
2148 Female, age 91, left hemisphere 47.1
1911 Female, age 85, right hemisphere 46.3
1855 Male, age 76, left hemisphere 43.6
Dentate gyrus
nTPM: 45.7
2531 Female, age 67, both hemispheres 49.7
2530 Female, age 94, left hemisphere 49.4
2246 Female, age 85, both hemispheres 46.8
1927 Female, age 91, both hemispheres 45.7
2010 Male, age 76, both hemispheres 41.7
2528 Male, age 74, both hemispheres 40.8
Entorhinal gyrus
nTPM: 44.7
2686 Male, age 75, right hemisphere 51.7
2117 Female, age 91, right hemisphere 44.4
1938 Female, age 85, left hemisphere 44.2
2613 Female, age 94, left hemisphere 44.2
1787 Male, age 76, left hemisphere 42.3
2764 Male, age 80, right hemisphere 41.4
Hippocampus, CA1
nTPM: 47.3
2749 Male, age 80, left hemisphere 54.7
1873 Female, age 85, both hemispheres 47.7
2045 Male, age 76, both hemispheres 47.1
2527 Male, age 74, both hemispheres 46.3
2082 Female, age 91, right hemisphere 40.5
Hippocampus, CA2
nTPM: 45.6
1963 Male, age 80, left hemisphere 52.2
1892 Male, age 76, both hemispheres 46.9
2437 Female, age 94, left hemisphere 46.9
2113 Female, age 91, right hemisphere 44.4
1940 Female, age 85, left hemisphere 42.1
2249 Male, age 74, both hemispheres 41.2
Hippocampus, CA3
nTPM: 48.1
2137 Male, age 80, left hemisphere 55.4
1891 Female, age 85, both hemispheres 50.9
2861 Female, age 67, both hemispheres 50.7
1867 Male, age 76, both hemispheres 47.2
2620 Female, age 94, left hemisphere 44.6
2436 Male, age 74, both hemispheres 40.0
Parahippocampal cortex
nTPM: 43.7
2250 Female, age 67, right hemisphere 45.5
2532 Female, age 72, left hemisphere 44.7
1850 Male, age 80, both hemispheres 44.6
2245 Female, age 91, both hemispheres 44.5
2692 Male, age 74, both hemispheres 44.1
1933 Female, age 85, both hemispheres 43.8
2018 Male, age 76, both hemispheres 43.4
2622 Female, age 67, right hemisphere 42.8
2693 Female, age 94, both hemispheres 42.3
1990 Female, age 91, right hemisphere 40.8
Perirhinal gyrus
nTPM: 44.0
1841 Female, age 85, right hemisphere 47.0
1847 Female, age 91, left hemisphere 44.6
1794 Male, age 80, right hemisphere 43.5
2521 Female, age 94, right hemisphere 42.6
2848 Male, age 76, right hemisphere 42.3
Subiculum
nTPM: 45.5
2438 Female, age 94, left hemisphere 47.4
1977 Female, age 85, both hemispheres 47.2
1901 Male, age 80, both hemispheres 47.1
2729 Female, age 91, right hemisphere 44.7
2042 Male, age 76, both hemispheres 43.6
2619 Male, age 74, both hemispheres 42.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 46.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 46.5
Samples: 197

Max nTPM: 86.4
Min nTPM: 23.5
Std nTPM: 8.3
Median nTPM: 45.0
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 86.4
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 77.1
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 71.9
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 71.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 71.3
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 70.9
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 66.0
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 65.5
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 64.6
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 64.3
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 63.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 44.0
FF:10153-102I9 76 years, female 45.1
FF:10169-103B7 60 years, female 42.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 61.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 61.8
Samples: 4

Max nTPM: 68.9
Min nTPM: 55.5
Sample A Female 68.9
Sample B Female 64.4
Sample C Male 58.4
Sample D Male 55.5
Entorhinal cortex
nTPM: 60.6
Samples: 4

Max nTPM: 67.2
Min nTPM: 49.0
Sample A Female 63.5
Sample B Female 67.2
Sample C Male 62.8
Sample D Male 49.0
Subiculum
nTPM: 59.7
Samples: 4

Max nTPM: 73.0
Min nTPM: 52.4
Sample A Female 73.0
Sample B Female 58.5
Sample C Male 54.8
Sample D Male 52.4
Ventral hippocampus
nTPM: 59.6
Samples: 4

Max nTPM: 66.8
Min nTPM: 50.7
Sample A Female 50.7
Sample B Female 54.2
Sample C Male 66.5
Sample D Male 66.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 101.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 101.8
Samples: 4

Max nTPM: 111.0
Min nTPM: 97.1
Sample A Male 98.6
Sample B Male 100.6
Sample C Female 97.1
Sample D Female 111.0
Hippocampal formation
nTPM: 98.4
Samples: 4

Max nTPM: 106.7
Min nTPM: 87.2
Sample A Male 103.2
Sample B Male 96.5
Sample C Female 106.7
Sample D Female 87.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 9.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.2
583544 Antisense, RP_040831_02_F10, Mouse strain C57BL/6J (56 days, male) 15.1
74047910 Antisense, RP_051214_02_C07, Mouse strain C57BL/6J (56 days, male) 3.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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