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NIPSNAP1
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:37.8 nTPM
HPA:37.8 nTPM
GTEx:44.7 nTPM
FANTOM5:53.5 Scaled Tags Per Million
Pig:0.0 nTPM
Mouse:64.0 nTPM
Allen mouse:10.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA059227
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 37.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 33.1
1857 Female, age 85, left hemisphere 36.3
1781 Male, age 74, unknown 34.9
2846 Female, age 79, unknown 34.6
2290 Female, age 72, unknown 33.3
1854 Male, age 80, left hemisphere 33.0
2288 Male, age 75, left hemisphere 32.7
2481 Female, age 94, left hemisphere 32.1
2289 Male, age 61, right hemisphere 28.3
Claustrum
nTPM: 32.6
2568 Male, age 61, both hemispheres 38.3
2284 Female, age 91, both hemispheres 34.9
2198 Male, age 80, both hemispheres 34.8
2491 Male, age 75, both hemispheres 33.6
2645 Female, age 72, unknown 32.8
2392 Female, age 94, both hemispheres 31.4
1956 Male, age 74, unknown 30.7
2196 Female, age 79, unknown 29.8
2292 Female, age 85, both hemispheres 27.3
Globus pallidus, externus
nTPM: 26.3
2772 Female, age 79, unknown 28.9
2395 Male, age 75, both hemispheres 28.3
2646 Male, age 61, right hemisphere 26.6
1996 Male, age 80, right hemisphere 24.9
2567 Female, age 72, unknown 22.8
Globus pallidus, internus
nTPM: 26.2
2483 Female, age 94, right hemisphere 30.9
1818 Male, age 74, unknown 28.9
2287 Male, age 75, right hemisphere 27.6
2037 Male, age 80, right hemisphere 25.2
2778 Female, age 91, both hemispheres 25.0
2566 Female, age 72, unknown 24.6
2111 Female, age 85, right hemisphere 21.5
Nucleus accumbens
nTPM: 33.7
1856 Female, age 91, right hemisphere 41.8
2824 Male, age 61, right hemisphere 36.8
1806 Female, age 85, left hemisphere 35.9
1783 Male, age 74, unknown 35.4
2286 Male, age 75, left hemisphere 33.3
2698 Female, age 72, unknown 33.3
2391 Female, age 94, left hemisphere 27.5
2732 Male, age 80, right hemisphere 25.4
Nucleus basalis of Meynert
nTPM: 29.7
2393 Male, age 80, right hemisphere 32.1
2484 Female, age 94, left hemisphere 30.7
2569 Male, age 61, both hemispheres 28.1
2821 Male, age 75, both hemispheres 27.8
Nucleus of the diagonal band
nTPM: 37.8
2775 Male, age 80, right hemisphere 41.5
1812 Female, age 91, both hemispheres 41.3
2195 Female, age 85, both hemispheres 36.9
2029 Male, age 61, right hemisphere 36.7
1979 Male, age 74, unknown 32.6
Olfactory tubercle
nTPM: 36.4
1998 Female, age 91, both hemispheres 40.5
1846 Male, age 80, right hemisphere 38.0
2487 Female, age 94, left hemisphere 34.6
2856 Male, age 75, right hemisphere 32.7
Putamen
nTPM: 32.9
1838 Male, age 80, right hemisphere 39.4
1937 Female, age 91, right hemisphere 37.7
2466 Female, age 79, unknown 35.7
1829 Male, age 74, unknown 32.5
2482 Female, age 94, left hemisphere 30.0
2647 Male, age 75, left hemisphere 29.1
2489 Female, age 72, unknown 26.0
Septal nuclei
nTPM: 34.3
1960 Male, age 74, unknown 39.7
2031 Female, age 72, unknown 38.2
2009 Female, age 91, both hemispheres 35.4
2629 Female, age 94, right hemisphere 33.2
2059 Female, age 85, both hemispheres 33.0
2394 Male, age 61, left hemisphere 32.1
2199 Male, age 80, right hemisphere 28.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 44.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 38.7
Samples: 246

Max nTPM: 72.5
Min nTPM: 16.9
Std nTPM: 11.0
Median nTPM: 37.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 72.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 64.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 63.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 61.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 60.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 59.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 59.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 59.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 59.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 59.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 59.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 44.7
Samples: 246

Max nTPM: 75.8
Min nTPM: 16.3
Std nTPM: 12.2
Median nTPM: 46.0
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 75.8
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 75.2
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 69.5
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 67.4
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 66.1
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 65.9
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 65.7
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 65.4
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 65.0
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 63.9
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 63.5
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Brain - Putamen (basal ganglia)
Average nTPM: 38.3
Samples: 205

Max nTPM: 71.6
Min nTPM: 18.1
Std nTPM: 10.6
Median nTPM: 37.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 71.6
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 63.4
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 63.2
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 61.6
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 60.3
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 59.3
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 58.9
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 58.3
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 56.9
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 56.8
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 56.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 39.6
FF:10164-103B2 76 years, female 39.6
Globus pallidus
Scaled Tags Per Million: 19.2
FF:10175-103C4 60 years, female 20.5
FF:10161-103A8 76 years, female 18.0
Nucleus accumbens
Scaled Tags Per Million: 44.4
FF:10037-101F1 23-56 years, mixed 44.4
Putamen
Scaled Tags Per Million: 53.5
FF:10176-103C5 60 years, female 53.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.0
Pig sample Sample description nTPM
Caudate
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Putamen
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Septum
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Ventral pallidum
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 64.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 59.5
Samples: 4

Max nTPM: 61.5
Min nTPM: 58.6
Sample A Male 61.5
Sample B Male 59.3
Sample C Female 58.7
Sample D Female 58.6
Septum
nTPM: 63.2
Samples: 4

Max nTPM: 72.5
Min nTPM: 58.2
Sample A Male 72.5
Sample B Male 63.3
Sample C Female 58.2
Sample D Female 58.9
Ventral forebrain
nTPM: 64.1
Samples: 4

Max nTPM: 67.2
Min nTPM: 61.2
Sample A Male 67.2
Sample B Male 66.5
Sample C Female 61.2
Sample D Female 61.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 10.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 10.5
69059970 Antisense, RP_050317_04_H03, Mouse strain C57BL/6J (56 days, male) 10.5
Pallidum
Expression energy: 10.3
69059970 Antisense, RP_050317_04_H03, Mouse strain C57BL/6J (56 days, male) 10.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.