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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:128.1 nTPM
HPA:128.1 nTPM
GTEx:91.2 nTPM
FANTOM5:1029.3 Scaled Tags Per Million
Pig:54.4 nTPM
Mouse:45.4 nTPM
Allen mouse:3.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 128.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 108.7
2411 Female, age 72, unknown 142.3
2019 Male, age 18, unknown 126.5
1833 Male, age 53, unknown 121.2
1830 Male, age 51, unknown 119.2
1870 Female, age 42, unknown 118.8
2828 Female, age 72, unknown 103.8
2666 Male, age 74, left hemisphere 94.7
2219 Male, age 76, both hemispheres 88.4
2586 Male, age 75, left hemisphere 88.0
1827 Male, age 72, unknown 83.8
Dorsal raphe nucleus
nTPM: 82.6
2750 Male, age 76, both hemispheres 144.2
1828 Male, age 53, unknown 80.8
2016 Female, age 72, unknown 76.8
2298 Female, age 72, unknown 55.7
2047 Male, age 72, unknown 55.2
Inferior colliculus
nTPM: 75.7
1890 Male, age 53, unknown 82.9
1848 Female, age 42, unknown 75.3
2097 Female, age 72, unknown 74.5
2849 Male, age 72, unknown 70.1
Median raphe nucleus
nTPM: 75.7
2220 Male, age 76, midline 75.7
Pedunculopontine tegmental nucleus
nTPM: 89.2
2334 Male, age 80, both hemispheres 95.2
1921 Female, age 85, both hemispheres 89.1
2338 Male, age 61, both hemispheres 83.1
Periaquaductal grey, anterior
nTPM: 76.6
1947 Male, age 18, unknown 91.1
1795 Male, age 51, unknown 70.0
2502 Female, age 75, unknown 68.8
Periaquaductal grey, dorsal
nTPM: 63.6
2464 Female, age 72, unknown 90.5
1831 Male, age 72, unknown 74.7
1840 Male, age 53, unknown 46.0
2850 Male, age 76, both hemispheres 43.0
Periaquaductal grey, lateral
nTPM: 64.4
2272 Male, age 74, both hemispheres 73.2
2053 Male, age 18, unknown 72.5
2140 Male, age 76, both hemispheres 47.5
Pretectal area
nTPM: 87.7
1815 Male, age 53, unknown 109.4
2407 Male, age 75, both hemispheres 105.4
2316 Male, age 76, right hemisphere 99.7
2007 Male, age 72, unknown 99.0
1944 Female, age 72, unknown 95.8
1817 Female, age 42, unknown 95.5
1816 Male, age 51, unknown 78.1
2667 Female, age 75, unknown 76.1
2825 Male, age 18, unknown 73.9
2273 Male, age 74, both hemispheres 68.6
2224 Female, age 72, unknown 63.7
Red nucleus
nTPM: 128.1
1904 Male, age 53, unknown 148.0
1865 Male, age 51, unknown 146.6
2823 Male, age 76, right hemisphere 135.9
1821 Female, age 72, unknown 132.7
2785 Male, age 18, unknown 129.2
2769 Male, age 72, unknown 129.0
2588 Male, age 74, left hemisphere 127.1
2227 Male, age 72, unknown 126.9
2503 Female, age 72, unknown 123.7
1954 Female, age 42, unknown 115.2
2584 Male, age 75, left hemisphere 111.5
2725 Female, age 75, unknown 111.3
Substantia nigra
nTPM: 88.2
2590 Female, age 75, unknown 119.5
2583 Male, age 75, right hemisphere 109.7
2409 Female, age 72, unknown 102.7
1889 Female, age 72, unknown 98.5
1851 Male, age 51, unknown 97.1
2241 Male, age 72, unknown 80.9
1941 Male, age 53, unknown 72.3
1916 Female, age 42, unknown 71.7
2699 Male, age 18, unknown 65.4
2665 Male, age 74, both hemispheres 63.8
Superior colliculus
nTPM: 101.6
1913 Female, age 42, unknown 138.1
1995 Male, age 72, unknown 137.1
1895 Male, age 76, right hemisphere 112.3
2668 Female, age 75, unknown 102.0
2587 Male, age 74, left hemisphere 99.9
1839 Male, age 51, unknown 92.3
2261 Male, age 18, unknown 90.0
2087 Female, age 72, unknown 88.3
1796 Male, age 53, unknown 86.2
2664 Male, age 75, both hemispheres 69.7
Ventral tegmental area
nTPM: 91.9
2410 Female, age 72, unknown 116.3
2223 Female, age 72, unknown 103.2
2021 Male, age 53, unknown 89.0
2218 Male, age 76, both hemispheres 83.0
1942 Male, age 51, unknown 81.8
1915 Female, age 42, unknown 78.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 91.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 91.2
Samples: 139

Max nTPM: 368.0
Min nTPM: 20.0
Std nTPM: 58.6
Median nTPM: 74.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 368.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 304.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 303.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 294.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 265.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 248.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 225.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 216.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 189.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 179.6
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 177.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1029.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1029.3
FF:10158-103A5 76 years, female 1029.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 54.4
Pig sample Sample description nTPM
Midbrain
nTPM: 54.3
Samples: 4

Max nTPM: 75.0
Min nTPM: 45.2
Sample A Female 75.0
Sample B Female 48.8
Sample C Male 45.2
Sample D Male 48.0
Periaqueductal gray
nTPM: 35.8
Samples: 3

Max nTPM: 40.2
Min nTPM: 30.6
Sample B Female 40.2
Sample C Male 30.6
Sample D Male 36.6
Substantia nigra
nTPM: 54.4
Samples: 4

Max nTPM: 82.7
Min nTPM: 33.7
Sample A Female 49.7
Sample B Female 33.7
Sample C Male 51.4
Sample D Male 82.7
Superior colliculi
nTPM: 45.4
Samples: 4

Max nTPM: 58.8
Min nTPM: 21.1
Sample A Female 46.9
Sample B Female 21.1
Sample C Male 54.6
Sample D Male 58.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 45.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 45.4
Samples: 4

Max nTPM: 51.4
Min nTPM: 37.5
Sample A Male 37.5
Sample B Male 42.7
Sample C Female 51.4
Sample D Female 50.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.8
73497519 Antisense, RP_051121_01_C04, Mouse strain C57BL/6J (56 days, male) 3.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.