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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:22.3 nTPM
HPA:22.3 nTPM
GTEx:25.2 nTPM
FANTOM5:16.1 Scaled Tags Per Million
Pig:7.9 nTPM
Mouse:21.9 nTPM
Allen mouse:8.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA054476Antibody CAB004461
Glial cells MediumHigh
Neuronal cells LowHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 22.3
Sample id Sample description nTPM
Hippocampus
nTPM: 21.6
2529 Female, age 94, left hemisphere 23.0
1898 Male, age 80, left hemisphere 22.6
2621 Female, age 67, right hemisphere 22.4
2148 Female, age 91, left hemisphere 21.6
1855 Male, age 76, left hemisphere 21.4
1911 Female, age 85, right hemisphere 18.6
Dentate gyrus
nTPM: 20.2
2530 Female, age 94, left hemisphere 21.6
2010 Male, age 76, both hemispheres 21.5
1927 Female, age 91, both hemispheres 19.8
2531 Female, age 67, both hemispheres 19.7
2246 Female, age 85, both hemispheres 19.6
2528 Male, age 74, both hemispheres 19.3
Entorhinal gyrus
nTPM: 20.6
2117 Female, age 91, right hemisphere 24.1
2686 Male, age 75, right hemisphere 21.4
2764 Male, age 80, right hemisphere 21.0
1787 Male, age 76, left hemisphere 19.4
1938 Female, age 85, left hemisphere 19.3
2613 Female, age 94, left hemisphere 18.2
Hippocampus, CA1
nTPM: 19.2
2082 Female, age 91, right hemisphere 21.4
2527 Male, age 74, both hemispheres 19.2
1873 Female, age 85, both hemispheres 19.1
2045 Male, age 76, both hemispheres 19.0
2749 Male, age 80, left hemisphere 17.4
Hippocampus, CA2
nTPM: 22.3
1963 Male, age 80, left hemisphere 25.7
1940 Female, age 85, left hemisphere 23.1
2437 Female, age 94, left hemisphere 22.6
2113 Female, age 91, right hemisphere 22.2
1892 Male, age 76, both hemispheres 20.9
2249 Male, age 74, both hemispheres 19.2
Hippocampus, CA3
nTPM: 19.6
2861 Female, age 67, both hemispheres 23.9
1867 Male, age 76, both hemispheres 22.1
2620 Female, age 94, left hemisphere 18.3
1891 Female, age 85, both hemispheres 18.0
2137 Male, age 80, left hemisphere 17.9
2436 Male, age 74, both hemispheres 17.6
Parahippocampal cortex
nTPM: 20.0
2622 Female, age 67, right hemisphere 22.6
2018 Male, age 76, both hemispheres 22.1
2250 Female, age 67, right hemisphere 20.9
2532 Female, age 72, left hemisphere 20.3
2245 Female, age 91, both hemispheres 20.1
2692 Male, age 74, both hemispheres 19.4
1933 Female, age 85, both hemispheres 19.0
1850 Male, age 80, both hemispheres 18.9
2693 Female, age 94, both hemispheres 18.4
1990 Female, age 91, right hemisphere 18.3
Perirhinal gyrus
nTPM: 19.2
1794 Male, age 80, right hemisphere 20.2
2521 Female, age 94, right hemisphere 20.1
1841 Female, age 85, right hemisphere 19.2
1847 Female, age 91, left hemisphere 18.3
2848 Male, age 76, right hemisphere 18.1
Subiculum
nTPM: 20.3
2042 Male, age 76, both hemispheres 23.8
2729 Female, age 91, right hemisphere 23.7
2619 Male, age 74, both hemispheres 20.7
1901 Male, age 80, both hemispheres 18.8
2438 Female, age 94, left hemisphere 17.9
1977 Female, age 85, both hemispheres 16.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 25.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 25.2
Samples: 197

Max nTPM: 77.7
Min nTPM: 12.0
Std nTPM: 8.7
Median nTPM: 23.1
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 77.7
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 72.4
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 59.0
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 50.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 49.3
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 46.6
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 46.5
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 43.9
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 43.1
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 40.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 38.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 16.1
FF:10153-102I9 76 years, female 25.9
FF:10169-103B7 60 years, female 6.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 7.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 7.2
Samples: 4

Max nTPM: 8.2
Min nTPM: 6.1
Sample A Female 8.2
Sample B Female 6.7
Sample C Male 7.7
Sample D Male 6.1
Entorhinal cortex
nTPM: 7.9
Samples: 4

Max nTPM: 8.9
Min nTPM: 7.2
Sample A Female 7.2
Sample B Female 8.2
Sample C Male 8.9
Sample D Male 7.2
Subiculum
nTPM: 6.9
Samples: 4

Max nTPM: 9.3
Min nTPM: 5.9
Sample A Female 9.3
Sample B Female 6.0
Sample C Male 6.3
Sample D Male 5.9
Ventral hippocampus
nTPM: 7.5
Samples: 4

Max nTPM: 10.3
Min nTPM: 5.3
Sample A Female 6.7
Sample B Female 5.3
Sample C Male 10.3
Sample D Male 7.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 21.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 21.9
Samples: 4

Max nTPM: 25.2
Min nTPM: 17.6
Sample A Male 24.1
Sample B Male 20.6
Sample C Female 25.2
Sample D Female 17.6
Hippocampal formation
nTPM: 21.9
Samples: 4

Max nTPM: 23.8
Min nTPM: 20.1
Sample A Male 22.5
Sample B Male 20.1
Sample C Female 21.3
Sample D Female 23.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.5
2323 Antisense, RP_040507_02_A11, Mouse strain C57BL/6J (56 days, male) 8.5
2324 Antisense, RP_040507_02_A11, Mouse strain C57BL/6J (56 days, male) 7.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.