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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:56.8 nTPM
HPA:56.8 nTPM
GTEx:66.4 nTPM
FANTOM5:27.7 Scaled Tags Per Million
Pig:22.8 nTPM
Mouse:11.3 nTPM
Allen mouse:13.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA047412
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 56.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 56.8
2481 Female, age 94, left hemisphere 63.6
2289 Male, age 61, right hemisphere 62.5
2288 Male, age 75, left hemisphere 61.4
1854 Male, age 80, left hemisphere 57.1
2290 Female, age 72, unknown 54.3
1857 Female, age 85, left hemisphere 53.9
2846 Female, age 79, unknown 52.2
1781 Male, age 74, unknown 49.3
Claustrum
nTPM: 42.1
2568 Male, age 61, both hemispheres 44.3
2645 Female, age 72, unknown 43.3
2292 Female, age 85, both hemispheres 43.1
1956 Male, age 74, unknown 42.4
2284 Female, age 91, both hemispheres 41.9
2491 Male, age 75, both hemispheres 41.8
2198 Male, age 80, both hemispheres 41.7
2196 Female, age 79, unknown 41.2
2392 Female, age 94, both hemispheres 39.1
Globus pallidus, externus
nTPM: 41.9
2646 Male, age 61, right hemisphere 48.2
2567 Female, age 72, unknown 44.2
1996 Male, age 80, right hemisphere 40.1
2772 Female, age 79, unknown 40.1
2395 Male, age 75, both hemispheres 37.0
Globus pallidus, internus
nTPM: 40.1
2483 Female, age 94, right hemisphere 47.0
2566 Female, age 72, unknown 42.7
2111 Female, age 85, right hemisphere 40.1
2778 Female, age 91, both hemispheres 39.2
2037 Male, age 80, right hemisphere 38.4
1818 Male, age 74, unknown 36.6
2287 Male, age 75, right hemisphere 36.5
Nucleus accumbens
nTPM: 48.1
2286 Male, age 75, left hemisphere 62.5
1783 Male, age 74, unknown 51.5
1806 Female, age 85, left hemisphere 50.8
2391 Female, age 94, left hemisphere 50.4
2824 Male, age 61, right hemisphere 48.1
2698 Female, age 72, unknown 41.7
1856 Female, age 91, right hemisphere 39.9
2732 Male, age 80, right hemisphere 39.5
Nucleus basalis of Meynert
nTPM: 47.5
2569 Male, age 61, both hemispheres 55.1
2484 Female, age 94, left hemisphere 50.0
2393 Male, age 80, right hemisphere 44.5
2821 Male, age 75, both hemispheres 40.4
Nucleus of the diagonal band
nTPM: 39.2
2195 Female, age 85, both hemispheres 39.9
1979 Male, age 74, unknown 39.8
2029 Male, age 61, right hemisphere 39.5
1812 Female, age 91, both hemispheres 38.4
2775 Male, age 80, right hemisphere 38.3
Olfactory tubercle
nTPM: 42.1
2856 Male, age 75, right hemisphere 45.9
1846 Male, age 80, right hemisphere 42.5
1998 Female, age 91, both hemispheres 41.9
2487 Female, age 94, left hemisphere 38.2
Putamen
nTPM: 55.6
2647 Male, age 75, left hemisphere 73.5
2489 Female, age 72, unknown 60.1
2482 Female, age 94, left hemisphere 56.1
2466 Female, age 79, unknown 52.0
1829 Male, age 74, unknown 51.5
1838 Male, age 80, right hemisphere 48.3
1937 Female, age 91, right hemisphere 48.0
Septal nuclei
nTPM: 41.2
1960 Male, age 74, unknown 51.2
2059 Female, age 85, both hemispheres 43.5
2031 Female, age 72, unknown 42.9
2009 Female, age 91, both hemispheres 38.8
2394 Male, age 61, left hemisphere 38.3
2629 Female, age 94, right hemisphere 37.6
2199 Male, age 80, right hemisphere 35.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 66.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 59.0
Samples: 246

Max nTPM: 179.7
Min nTPM: 9.2
Std nTPM: 29.7
Median nTPM: 53.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 179.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 151.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 146.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 141.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 140.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 138.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 127.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 123.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 122.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 118.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 117.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 32.7
Samples: 246

Max nTPM: 140.8
Min nTPM: 3.6
Std nTPM: 19.8
Median nTPM: 28.3
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 140.8
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 113.7
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 103.6
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 92.7
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 86.3
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 85.9
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 82.7
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 81.7
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 80.6
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 75.3
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 74.2
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Brain - Putamen (basal ganglia)
Average nTPM: 66.4
Samples: 205

Max nTPM: 176.9
Min nTPM: 10.9
Std nTPM: 32.9
Median nTPM: 60.1
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 176.9
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 163.1
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 158.7
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 158.6
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 146.3
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 138.6
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 135.9
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 132.2
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 131.5
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 131.1
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 130.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 25.8
FF:10164-103B2 76 years, female 25.8
Globus pallidus
Scaled Tags Per Million: 18.3
FF:10161-103A8 76 years, female 24.9
FF:10175-103C4 60 years, female 11.8
Nucleus accumbens
Scaled Tags Per Million: 27.7
FF:10037-101F1 23-56 years, mixed 27.7
Putamen
Scaled Tags Per Million: 26.7
FF:10176-103C5 60 years, female 26.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 22.8
Pig sample Sample description nTPM
Caudate
nTPM: 22.8
Samples: 4

Max nTPM: 27.8
Min nTPM: 14.4
Sample A Female 14.4
Sample B Female 24.2
Sample C Male 27.8
Sample D Male 24.9
Putamen
nTPM: 21.0
Samples: 4

Max nTPM: 33.0
Min nTPM: 8.3
Sample A Female 8.3
Sample B Female 18.7
Sample C Male 33.0
Sample D Male 23.9
Septum
nTPM: 18.7
Samples: 4

Max nTPM: 23.6
Min nTPM: 13.4
Sample A Female 15.8
Sample B Female 21.8
Sample C Male 13.4
Sample D Male 23.6
Ventral pallidum
nTPM: 19.1
Samples: 4

Max nTPM: 23.4
Min nTPM: 15.0
Sample A Female 18.5
Sample B Female 23.4
Sample C Male 15.0
Sample D Male 19.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 11.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 11.3
Samples: 4

Max nTPM: 13.6
Min nTPM: 10.0
Sample A Male 11.5
Sample B Male 10.2
Sample C Female 10.0
Sample D Female 13.6
Septum
nTPM: 9.8
Samples: 4

Max nTPM: 11.2
Min nTPM: 6.4
Sample A Male 6.4
Sample B Male 11.1
Sample C Female 11.2
Sample D Female 10.6
Ventral forebrain
nTPM: 10.9
Samples: 4

Max nTPM: 13.3
Min nTPM: 8.6
Sample A Male 11.5
Sample B Male 8.6
Sample C Female 13.3
Sample D Female 10.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 13.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 13.5
68499081 Antisense, RP_050113_02_H08, Mouse strain C57BL/6J (56 days, male) 13.5
Pallidum
Expression energy: 10.5
68499081 Antisense, RP_050113_02_H08, Mouse strain C57BL/6J (56 days, male) 10.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.