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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:70.5 nTPM
HPA:70.5 nTPM
GTEx:68.9 nTPM
FANTOM5:29.5 Scaled Tags Per Million
Pig:19.1 nTPM
Mouse:13.3 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 70.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 66.0
2586 Male, age 75, left hemisphere 76.8
2666 Male, age 74, left hemisphere 76.3
2828 Female, age 72, unknown 68.7
1833 Male, age 53, unknown 66.9
1830 Male, age 51, unknown 66.1
2411 Female, age 72, unknown 62.7
1870 Female, age 42, unknown 62.2
2219 Male, age 76, both hemispheres 60.6
1827 Male, age 72, unknown 60.4
2019 Male, age 18, unknown 59.2
Dorsal raphe nucleus
nTPM: 56.9
2750 Male, age 76, both hemispheres 61.9
2016 Female, age 72, unknown 61.4
1828 Male, age 53, unknown 57.6
2047 Male, age 72, unknown 52.9
2298 Female, age 72, unknown 50.8
Inferior colliculus
nTPM: 56.9
2849 Male, age 72, unknown 63.1
1848 Female, age 42, unknown 57.5
1890 Male, age 53, unknown 55.5
2097 Female, age 72, unknown 51.4
Median raphe nucleus
nTPM: 53.2
2220 Male, age 76, midline 53.2
Pedunculopontine tegmental nucleus
nTPM: 54.6
2334 Male, age 80, both hemispheres 59.8
1921 Female, age 85, both hemispheres 55.5
2338 Male, age 61, both hemispheres 48.5
Periaquaductal grey, anterior
nTPM: 58.6
2502 Female, age 75, unknown 62.4
1795 Male, age 51, unknown 56.7
1947 Male, age 18, unknown 56.7
Periaquaductal grey, dorsal
nTPM: 56.3
2464 Female, age 72, unknown 59.7
1831 Male, age 72, unknown 55.9
1840 Male, age 53, unknown 55.1
2850 Male, age 76, both hemispheres 54.6
Periaquaductal grey, lateral
nTPM: 55.7
2053 Male, age 18, unknown 58.0
2140 Male, age 76, both hemispheres 55.9
2272 Male, age 74, both hemispheres 53.3
Pretectal area
nTPM: 57.2
1815 Male, age 53, unknown 65.2
2825 Male, age 18, unknown 61.6
2316 Male, age 76, right hemisphere 60.5
2407 Male, age 75, both hemispheres 59.9
1817 Female, age 42, unknown 59.6
2007 Male, age 72, unknown 57.3
1816 Male, age 51, unknown 55.7
2667 Female, age 75, unknown 53.3
1944 Female, age 72, unknown 52.9
2224 Female, age 72, unknown 52.6
2273 Male, age 74, both hemispheres 50.3
Red nucleus
nTPM: 70.5
2588 Male, age 74, left hemisphere 82.7
2503 Female, age 72, unknown 78.8
1904 Male, age 53, unknown 72.0
2769 Male, age 72, unknown 71.6
1865 Male, age 51, unknown 70.9
2227 Male, age 72, unknown 70.7
2584 Male, age 75, left hemisphere 68.7
1821 Female, age 72, unknown 68.1
2785 Male, age 18, unknown 67.3
2725 Female, age 75, unknown 66.9
2823 Male, age 76, right hemisphere 65.3
1954 Female, age 42, unknown 63.2
Substantia nigra
nTPM: 58.8
2665 Male, age 74, both hemispheres 65.6
2699 Male, age 18, unknown 63.7
2590 Female, age 75, unknown 61.2
2583 Male, age 75, right hemisphere 60.8
2409 Female, age 72, unknown 59.8
1851 Male, age 51, unknown 59.6
1889 Female, age 72, unknown 58.7
1941 Male, age 53, unknown 53.4
2241 Male, age 72, unknown 53.2
1916 Female, age 42, unknown 52.2
Superior colliculus
nTPM: 62.8
1995 Male, age 72, unknown 71.1
2587 Male, age 74, left hemisphere 66.5
1913 Female, age 42, unknown 65.5
1839 Male, age 51, unknown 64.4
2664 Male, age 75, both hemispheres 63.4
2668 Female, age 75, unknown 62.5
1895 Male, age 76, right hemisphere 60.7
1796 Male, age 53, unknown 59.7
2261 Male, age 18, unknown 59.6
2087 Female, age 72, unknown 54.9
Ventral tegmental area
nTPM: 57.5
2410 Female, age 72, unknown 64.2
2223 Female, age 72, unknown 56.8
2021 Male, age 53, unknown 56.7
1942 Male, age 51, unknown 56.6
1915 Female, age 42, unknown 56.4
2218 Male, age 76, both hemispheres 54.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 68.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 68.9
Samples: 139

Max nTPM: 199.6
Min nTPM: 18.1
Std nTPM: 37.1
Median nTPM: 59.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 199.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 191.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 181.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 157.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 149.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 148.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 148.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 144.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 143.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 138.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 135.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.5
FF:10158-103A5 76 years, female 29.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.1
Pig sample Sample description nTPM
Midbrain
nTPM: 17.8
Samples: 4

Max nTPM: 22.3
Min nTPM: 11.6
Sample A Female 21.9
Sample B Female 22.3
Sample C Male 11.6
Sample D Male 15.3
Periaqueductal gray
nTPM: 17.7
Samples: 3

Max nTPM: 19.8
Min nTPM: 16.1
Sample B Female 19.8
Sample C Male 17.3
Sample D Male 16.1
Substantia nigra
nTPM: 19.1
Samples: 4

Max nTPM: 21.8
Min nTPM: 16.8
Sample A Female 20.5
Sample B Female 17.1
Sample C Male 16.8
Sample D Male 21.8
Superior colliculi
nTPM: 16.7
Samples: 4

Max nTPM: 19.6
Min nTPM: 12.8
Sample A Female 19.6
Sample B Female 12.8
Sample C Male 15.3
Sample D Male 19.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.3
Samples: 4

Max nTPM: 14.1
Min nTPM: 11.9
Sample A Male 14.1
Sample B Male 11.9
Sample C Female 13.9
Sample D Female 13.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69289399 Antisense, RP_050407_03_B05, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.