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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
Mouse brain, Intensity
Hippocampal formationi 		85.740
RNA expressioni
Consensus:67.4 nTPM
HPA:67.4 nTPM
GTEx:175.8 nTPM
FANTOM5:272.3 Scaled Tags Per Million
Pig:146.8 nTPM
Mouse:271.7 nTPM
Allen mouse:21.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA042527
Glial cells Low
Neuronal cells High



HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA042527
Hippocampal formation mean intensity 85.740
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 57.069
Molecular layer of the dentate gyrus 64.957
Granular dentate gyrus 48.801
CA1 - oriens layer 56.091
CA1 - pyramidal layer 53.248
CA1 - radiatum layer 59.233
CA2 - oriens layer 71.341
CA2 - pyramidal layer 64.360
CA2 - radiatum layer 71.132
CA3 - oriens layer 80.500
CA3 - pyramidal layer 85.740
CA3 - radiatum layer 74.459
Stratum lucidum 52.402
Lacunosum moleculare 64.186
Subiculum 53.607

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 67.4
Sample id Sample description nTPM
Hippocampus
nTPM: 60.3
1898 Male, age 80, left hemisphere 89.2
2621 Female, age 67, right hemisphere 80.1
2148 Female, age 91, left hemisphere 55.6
2529 Female, age 94, left hemisphere 52.8
1855 Male, age 76, left hemisphere 50.4
1911 Female, age 85, right hemisphere 34.0
Dentate gyrus
nTPM: 55.7
2530 Female, age 94, left hemisphere 98.4
1927 Female, age 91, both hemispheres 65.1
2010 Male, age 76, both hemispheres 53.5
2531 Female, age 67, both hemispheres 48.0
2246 Female, age 85, both hemispheres 37.7
2528 Male, age 74, both hemispheres 31.8
Entorhinal gyrus
nTPM: 67.0
2764 Male, age 80, right hemisphere 94.8
2613 Female, age 94, left hemisphere 94.1
2686 Male, age 75, right hemisphere 64.1
1787 Male, age 76, left hemisphere 61.7
1938 Female, age 85, left hemisphere 59.8
2117 Female, age 91, right hemisphere 27.3
Hippocampus, CA1
nTPM: 56.2
2749 Male, age 80, left hemisphere 116.7
2527 Male, age 74, both hemispheres 64.7
1873 Female, age 85, both hemispheres 53.4
2082 Female, age 91, right hemisphere 25.4
2045 Male, age 76, both hemispheres 20.9
Hippocampus, CA2
nTPM: 57.6
2437 Female, age 94, left hemisphere 113.0
1892 Male, age 76, both hemispheres 93.7
1963 Male, age 80, left hemisphere 60.3
2249 Male, age 74, both hemispheres 36.3
2113 Female, age 91, right hemisphere 22.2
1940 Female, age 85, left hemisphere 20.1
Hippocampus, CA3
nTPM: 61.2
2861 Female, age 67, both hemispheres 96.9
1867 Male, age 76, both hemispheres 66.2
2137 Male, age 80, left hemisphere 63.0
2436 Male, age 74, both hemispheres 52.1
2620 Female, age 94, left hemisphere 47.5
1891 Female, age 85, both hemispheres 41.3
Parahippocampal cortex
nTPM: 67.4
2622 Female, age 67, right hemisphere 87.0
2245 Female, age 91, both hemispheres 86.6
1850 Male, age 80, both hemispheres 76.9
2692 Male, age 74, both hemispheres 71.2
1990 Female, age 91, right hemisphere 69.3
2693 Female, age 94, both hemispheres 69.3
2532 Female, age 72, left hemisphere 66.4
1933 Female, age 85, both hemispheres 61.4
2250 Female, age 67, right hemisphere 49.4
2018 Male, age 76, both hemispheres 36.3
Perirhinal gyrus
nTPM: 67.1
1847 Female, age 91, left hemisphere 85.8
1794 Male, age 80, right hemisphere 79.2
2848 Male, age 76, right hemisphere 60.2
1841 Female, age 85, right hemisphere 55.2
2521 Female, age 94, right hemisphere 55.2
Subiculum
nTPM: 63.9
2438 Female, age 94, left hemisphere 135.9
1901 Male, age 80, both hemispheres 71.8
2619 Male, age 74, both hemispheres 68.3
1977 Female, age 85, both hemispheres 57.6
2042 Male, age 76, both hemispheres 29.2
2729 Female, age 91, right hemisphere 20.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 175.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 175.8
Samples: 197

Max nTPM: 421.6
Min nTPM: 21.1
Std nTPM: 86.5
Median nTPM: 160.2
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 421.6
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 395.7
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 380.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 373.0
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 368.2
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 363.0
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 358.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 355.5
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 344.5
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 338.6
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 336.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 272.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 272.3
FF:10169-103B7 60 years, female 341.1
FF:10153-102I9 76 years, female 203.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 146.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 146.8
Samples: 4

Max nTPM: 204.0
Min nTPM: 94.9
Sample A Female 204.0
Sample B Female 136.7
Sample C Male 151.5
Sample D Male 94.9
Entorhinal cortex
nTPM: 132.2
Samples: 4

Max nTPM: 145.8
Min nTPM: 120.6
Sample A Female 132.3
Sample B Female 145.8
Sample C Male 130.0
Sample D Male 120.6
Subiculum
nTPM: 109.2
Samples: 4

Max nTPM: 156.3
Min nTPM: 84.9
Sample A Female 156.3
Sample B Female 87.4
Sample C Male 108.0
Sample D Male 84.9
Ventral hippocampus
nTPM: 144.9
Samples: 4

Max nTPM: 184.6
Min nTPM: 85.4
Sample A Female 183.7
Sample B Female 85.4
Sample C Male 184.6
Sample D Male 125.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 271.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 271.7
Samples: 4

Max nTPM: 280.8
Min nTPM: 263.2
Sample A Male 263.2
Sample B Male 280.8
Sample C Female 276.6
Sample D Female 266.1
Hippocampal formation
nTPM: 252.4
Samples: 4

Max nTPM: 261.9
Min nTPM: 240.6
Sample A Male 253.2
Sample B Male 253.8
Sample C Female 240.6
Sample D Female 261.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 21.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 21.6
68196909 Antisense, RP_041116_01_D02, Mouse strain C57BL/6J (56 days, male) 21.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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