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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:102.9 nTPM
HPA:102.9 nTPM
GTEx:111.8 nTPM
FANTOM5:51.3 Scaled Tags Per Million
Mouse:114.2 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 102.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 84.1
2586 Male, age 75, left hemisphere 135.4
2019 Male, age 18, unknown 94.9
2828 Female, age 72, unknown 89.9
2666 Male, age 74, left hemisphere 82.8
1827 Male, age 72, unknown 81.3
2411 Female, age 72, unknown 73.0
1830 Male, age 51, unknown 72.3
2219 Male, age 76, both hemispheres 71.9
1833 Male, age 53, unknown 71.1
1870 Female, age 42, unknown 68.0
Dorsal raphe nucleus
nTPM: 79.7
1828 Male, age 53, unknown 90.4
2047 Male, age 72, unknown 84.0
2016 Female, age 72, unknown 82.5
2298 Female, age 72, unknown 75.8
2750 Male, age 76, both hemispheres 66.0
Inferior colliculus
nTPM: 78.1
1890 Male, age 53, unknown 85.2
1848 Female, age 42, unknown 79.0
2097 Female, age 72, unknown 74.7
2849 Male, age 72, unknown 73.5
Median raphe nucleus
nTPM: 62.3
2220 Male, age 76, midline 62.3
Pedunculopontine tegmental nucleus
nTPM: 66.5
1921 Female, age 85, both hemispheres 72.9
2334 Male, age 80, both hemispheres 67.3
2338 Male, age 61, both hemispheres 59.3
Periaquaductal grey, anterior
nTPM: 76.9
1795 Male, age 51, unknown 81.1
2502 Female, age 75, unknown 81.0
1947 Male, age 18, unknown 68.5
Periaquaductal grey, dorsal
nTPM: 73.8
1831 Male, age 72, unknown 77.9
1840 Male, age 53, unknown 77.7
2464 Female, age 72, unknown 73.1
2850 Male, age 76, both hemispheres 66.6
Periaquaductal grey, lateral
nTPM: 70.6
2053 Male, age 18, unknown 76.7
2272 Male, age 74, both hemispheres 67.7
2140 Male, age 76, both hemispheres 67.4
Pretectal area
nTPM: 89.3
1816 Male, age 51, unknown 106.7
1944 Female, age 72, unknown 106.3
1817 Female, age 42, unknown 105.2
2007 Male, age 72, unknown 100.5
2407 Male, age 75, both hemispheres 97.1
1815 Male, age 53, unknown 95.9
2667 Female, age 75, unknown 86.6
2273 Male, age 74, both hemispheres 74.0
2825 Male, age 18, unknown 71.4
2316 Male, age 76, right hemisphere 70.7
2224 Female, age 72, unknown 67.9
Red nucleus
nTPM: 84.9
2584 Male, age 75, left hemisphere 121.8
2785 Male, age 18, unknown 93.2
2588 Male, age 74, left hemisphere 90.7
2503 Female, age 72, unknown 84.7
2725 Female, age 75, unknown 84.3
1821 Female, age 72, unknown 81.0
2769 Male, age 72, unknown 80.1
2227 Male, age 72, unknown 79.6
1954 Female, age 42, unknown 78.9
1904 Male, age 53, unknown 75.5
1865 Male, age 51, unknown 74.7
2823 Male, age 76, right hemisphere 74.1
Substantia nigra
nTPM: 102.9
2583 Male, age 75, right hemisphere 146.5
2665 Male, age 74, both hemispheres 125.3
1851 Male, age 51, unknown 106.7
2699 Male, age 18, unknown 98.3
2590 Female, age 75, unknown 97.8
1889 Female, age 72, unknown 93.3
1941 Male, age 53, unknown 92.3
2409 Female, age 72, unknown 92.0
1916 Female, age 42, unknown 91.3
2241 Male, age 72, unknown 85.2
Superior colliculus
nTPM: 89.1
2664 Male, age 75, both hemispheres 128.3
2087 Female, age 72, unknown 101.3
1995 Male, age 72, unknown 91.6
2261 Male, age 18, unknown 87.4
1796 Male, age 53, unknown 86.3
2668 Female, age 75, unknown 83.7
2587 Male, age 74, left hemisphere 83.4
1839 Male, age 51, unknown 79.7
1913 Female, age 42, unknown 79.1
1895 Male, age 76, right hemisphere 70.2
Ventral tegmental area
nTPM: 82.2
1915 Female, age 42, unknown 87.1
2410 Female, age 72, unknown 86.8
2223 Female, age 72, unknown 85.8
1942 Male, age 51, unknown 84.8
2021 Male, age 53, unknown 78.5
2218 Male, age 76, both hemispheres 70.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 111.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 111.8
Samples: 139

Max nTPM: 292.0
Min nTPM: 30.8
Std nTPM: 46.6
Median nTPM: 104.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 292.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 272.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 224.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 218.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 214.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 201.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 192.0
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 187.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 185.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 184.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 182.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.3
FF:10158-103A5 76 years, female 51.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 114.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 114.2
Samples: 4

Max nTPM: 115.1
Min nTPM: 112.8
Sample A Male 112.8
Sample B Male 114.9
Sample C Female 113.9
Sample D Female 115.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
70523790 Antisense, RP_050303_01_H06, Mouse strain C57BL/6J (56 days, male) 1.3

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The Human Protein Atlas

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