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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:27.0 nTPM
HPA:27.0 nTPM
GTEx:24.6 nTPM
FANTOM5:106.6 Scaled Tags Per Million
Pig:37.0 nTPM
Mouse:108.4 nTPM
Allen mouse:6.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA055868
Glial cells Low
Neuronal cells High


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 27.0
Sample id Sample description nTPM
Hippocampus
nTPM: 7.8
2621 Female, age 67, right hemisphere 12.2
1898 Male, age 80, left hemisphere 11.4
1911 Female, age 85, right hemisphere 9.3
1855 Male, age 76, left hemisphere 6.6
2148 Female, age 91, left hemisphere 4.3
2529 Female, age 94, left hemisphere 3.2
Dentate gyrus
nTPM: 7.4
1927 Female, age 91, both hemispheres 12.6
2246 Female, age 85, both hemispheres 9.6
2010 Male, age 76, both hemispheres 8.9
2531 Female, age 67, both hemispheres 6.0
2530 Female, age 94, left hemisphere 5.1
2528 Male, age 74, both hemispheres 2.1
Entorhinal gyrus
nTPM: 23.1
2613 Female, age 94, left hemisphere 31.6
2686 Male, age 75, right hemisphere 31.3
2764 Male, age 80, right hemisphere 24.9
1938 Female, age 85, left hemisphere 24.2
1787 Male, age 76, left hemisphere 16.0
2117 Female, age 91, right hemisphere 10.5
Hippocampus, CA1
nTPM: 12.9
2749 Male, age 80, left hemisphere 28.6
2082 Female, age 91, right hemisphere 12.7
2527 Male, age 74, both hemispheres 12.5
1873 Female, age 85, both hemispheres 8.7
2045 Male, age 76, both hemispheres 1.9
Hippocampus, CA2
nTPM: 12.0
1892 Male, age 76, both hemispheres 15.6
1963 Male, age 80, left hemisphere 13.1
2113 Female, age 91, right hemisphere 12.4
2249 Male, age 74, both hemispheres 12.4
2437 Female, age 94, left hemisphere 9.7
1940 Female, age 85, left hemisphere 8.6
Hippocampus, CA3
nTPM: 10.7
2137 Male, age 80, left hemisphere 20.6
1867 Male, age 76, both hemispheres 13.6
1891 Female, age 85, both hemispheres 8.9
2620 Female, age 94, left hemisphere 8.1
2436 Male, age 74, both hemispheres 7.5
2861 Female, age 67, both hemispheres 5.4
Parahippocampal cortex
nTPM: 23.7
1850 Male, age 80, both hemispheres 32.2
2693 Female, age 94, both hemispheres 32.2
2622 Female, age 67, right hemisphere 30.9
2245 Female, age 91, both hemispheres 25.0
2532 Female, age 72, left hemisphere 24.7
1990 Female, age 91, right hemisphere 23.5
1933 Female, age 85, both hemispheres 21.3
2250 Female, age 67, right hemisphere 18.8
2692 Male, age 74, both hemispheres 16.2
2018 Male, age 76, both hemispheres 12.5
Perirhinal gyrus
nTPM: 27.0
1794 Male, age 80, right hemisphere 30.3
1847 Female, age 91, left hemisphere 28.9
2848 Male, age 76, right hemisphere 28.9
1841 Female, age 85, right hemisphere 28.6
2521 Female, age 94, right hemisphere 18.5
Subiculum
nTPM: 10.6
1977 Female, age 85, both hemispheres 17.9
1901 Male, age 80, both hemispheres 13.7
2438 Female, age 94, left hemisphere 13.5
2042 Male, age 76, both hemispheres 8.6
2619 Male, age 74, both hemispheres 8.1
2729 Female, age 91, right hemisphere 1.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 24.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 24.6
Samples: 197

Max nTPM: 81.7
Min nTPM: 1.2
Std nTPM: 15.2
Median nTPM: 21.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 81.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 78.5
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 73.8
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 61.7
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 54.4
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 53.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 52.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 52.1
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 50.0
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 49.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 48.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 106.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 106.6
FF:10169-103B7 60 years, female 140.2
FF:10153-102I9 76 years, female 73.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 37.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 25.9
Samples: 4

Max nTPM: 32.8
Min nTPM: 21.3
Sample A Female 21.3
Sample B Female 26.8
Sample C Male 32.8
Sample D Male 22.5
Entorhinal cortex
nTPM: 37.0
Samples: 4

Max nTPM: 40.7
Min nTPM: 33.5
Sample A Female 33.5
Sample B Female 40.7
Sample C Male 37.3
Sample D Male 36.3
Subiculum
nTPM: 26.7
Samples: 4

Max nTPM: 30.7
Min nTPM: 25.0
Sample A Female 30.7
Sample B Female 25.4
Sample C Male 25.7
Sample D Male 25.0
Ventral hippocampus
nTPM: 24.5
Samples: 4

Max nTPM: 29.1
Min nTPM: 19.4
Sample A Female 19.4
Sample B Female 24.6
Sample C Male 24.8
Sample D Male 29.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 108.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 108.5
Samples: 4

Max nTPM: 112.8
Min nTPM: 102.0
Sample A Male 102.0
Sample B Male 111.5
Sample C Female 107.5
Sample D Female 112.8
Hippocampal formation
nTPM: 98.3
Samples: 4

Max nTPM: 112.9
Min nTPM: 86.6
Sample A Male 112.9
Sample B Male 102.1
Sample C Female 86.6
Sample D Female 91.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.1
72129250 Antisense, RP_051017_03_E10, Mouse strain C57BL/6J (56 days, male) 8.1
69113638 Antisense, RP_050316_02_E02, Mouse strain C57BL/6J (56 days, male) 4.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.