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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.3 nTPM
HPA:21.3 nTPM
GTEx:26.7 nTPM
FANTOM5:51.8 Scaled Tags Per Million
Pig:86.7 nTPM
Mouse:164.4 nTPM
Allen mouse:17.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 21.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 20.4
2290 Female, age 72, unknown 28.3
2289 Male, age 61, right hemisphere 27.8
2846 Female, age 79, unknown 25.8
1857 Female, age 85, left hemisphere 24.2
1854 Male, age 80, left hemisphere 24.0
1781 Male, age 74, unknown 14.4
2288 Male, age 75, left hemisphere 10.4
2481 Female, age 94, left hemisphere 8.1
Claustrum
nTPM: 5.3
2196 Female, age 79, unknown 10.0
2568 Male, age 61, both hemispheres 7.7
2392 Female, age 94, both hemispheres 5.9
2198 Male, age 80, both hemispheres 5.4
2284 Female, age 91, both hemispheres 5.1
1956 Male, age 74, unknown 4.0
2645 Female, age 72, unknown 3.9
2491 Male, age 75, both hemispheres 3.2
2292 Female, age 85, both hemispheres 2.2
Globus pallidus, externus
nTPM: 1.0
2646 Male, age 61, right hemisphere 2.7
2395 Male, age 75, both hemispheres 1.6
2772 Female, age 79, unknown 0.5
2567 Female, age 72, unknown 0.2
1996 Male, age 80, right hemisphere 0.0
Globus pallidus, internus
nTPM: 0.4
2483 Female, age 94, right hemisphere 3.1
2287 Male, age 75, right hemisphere 0.2
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 19.8
1856 Female, age 91, right hemisphere 33.4
2824 Male, age 61, right hemisphere 30.9
1783 Male, age 74, unknown 27.5
1806 Female, age 85, left hemisphere 22.7
2698 Female, age 72, unknown 18.1
2286 Male, age 75, left hemisphere 11.1
2732 Male, age 80, right hemisphere 8.1
2391 Female, age 94, left hemisphere 6.9
Nucleus basalis of Meynert
nTPM: 11.1
2393 Male, age 80, right hemisphere 23.6
2484 Female, age 94, left hemisphere 12.0
2821 Male, age 75, both hemispheres 5.7
2569 Male, age 61, both hemispheres 3.3
Nucleus of the diagonal band
nTPM: 6.4
1979 Male, age 74, unknown 10.8
2775 Male, age 80, right hemisphere 5.8
1812 Female, age 91, both hemispheres 5.4
2195 Female, age 85, both hemispheres 5.3
2029 Male, age 61, right hemisphere 4.5
Olfactory tubercle
nTPM: 4.0
2487 Female, age 94, left hemisphere 4.7
1846 Male, age 80, right hemisphere 4.4
1998 Female, age 91, both hemispheres 3.9
2856 Male, age 75, right hemisphere 3.1
Putamen
nTPM: 21.3
1838 Male, age 80, right hemisphere 31.7
2466 Female, age 79, unknown 27.6
1829 Male, age 74, unknown 27.5
1937 Female, age 91, right hemisphere 24.9
2489 Female, age 72, unknown 18.1
2647 Male, age 75, left hemisphere 11.3
2482 Female, age 94, left hemisphere 8.3
Septal nuclei
nTPM: 4.1
1960 Male, age 74, unknown 6.3
2031 Female, age 72, unknown 5.7
2059 Female, age 85, both hemispheres 5.0
2629 Female, age 94, right hemisphere 4.8
2009 Female, age 91, both hemispheres 4.2
2394 Male, age 61, left hemisphere 2.5
2199 Male, age 80, right hemisphere 0.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 26.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 26.7
Samples: 246

Max nTPM: 108.3
Min nTPM: 0.4
Std nTPM: 16.6
Median nTPM: 24.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 108.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 66.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 64.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 61.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 61.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 59.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 59.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 56.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 55.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 54.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 53.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 26.2
Samples: 246

Max nTPM: 76.7
Min nTPM: 0.2
Std nTPM: 14.7
Median nTPM: 28.2
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 76.7
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 59.5
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 58.6
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 57.1
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 56.0
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 55.0
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 54.5
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 53.8
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 51.5
GTEX-WZTO-0011-R6B-SM-4E3J6 40-49 years, male 51.5
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 50.0
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Brain - Putamen (basal ganglia)
Average nTPM: 23.0
Samples: 205

Max nTPM: 63.1
Min nTPM: 0.7
Std nTPM: 14.5
Median nTPM: 23.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 63.1
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 61.1
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 58.5
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 56.7
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 56.3
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 56.3
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 52.3
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 51.7
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 49.2
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 49.1
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 46.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 51.8
FF:10164-103B2 76 years, female 51.8
Globus pallidus
Scaled Tags Per Million: 8.3
FF:10175-103C4 60 years, female 13.4
FF:10161-103A8 76 years, female 3.2
Nucleus accumbens
Scaled Tags Per Million: 31.3
FF:10037-101F1 23-56 years, mixed 31.3
Putamen
Scaled Tags Per Million: 32.4
FF:10176-103C5 60 years, female 32.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 86.7
Pig sample Sample description nTPM
Caudate
nTPM: 81.9
Samples: 4

Max nTPM: 103.1
Min nTPM: 63.4
Sample A Female 63.4
Sample B Female 69.9
Sample C Male 103.1
Sample D Male 91.3
Putamen
nTPM: 86.8
Samples: 4

Max nTPM: 144.5
Min nTPM: 29.0
Sample A Female 29.0
Sample B Female 76.6
Sample C Male 144.5
Sample D Male 96.9
Septum
nTPM: 30.8
Samples: 4

Max nTPM: 65.8
Min nTPM: 1.2
Sample A Female 51.6
Sample B Female 65.8
Sample C Male 1.2
Sample D Male 4.5
Ventral pallidum
nTPM: 61.0
Samples: 4

Max nTPM: 81.5
Min nTPM: 16.1
Sample A Female 81.5
Sample B Female 81.1
Sample C Male 16.1
Sample D Male 65.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 164.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 164.5
Samples: 4

Max nTPM: 184.3
Min nTPM: 143.8
Sample A Male 184.3
Sample B Male 179.2
Sample C Female 143.8
Sample D Female 150.5
Septum
nTPM: 14.0
Samples: 4

Max nTPM: 18.5
Min nTPM: 9.1
Sample A Male 18.5
Sample B Male 9.1
Sample C Female 11.8
Sample D Female 16.4
Ventral forebrain
nTPM: 92.5
Samples: 4

Max nTPM: 103.3
Min nTPM: 84.9
Sample A Male 84.9
Sample B Male 92.2
Sample C Female 103.3
Sample D Female 89.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 17.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 17.2
71307280 Antisense, RP_050825_01_E12, Mouse strain C57BL/6J (56 days, male) 17.2
Pallidum
Expression energy: 7.2
71307280 Antisense, RP_050825_01_E12, Mouse strain C57BL/6J (56 days, male) 7.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.