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BRF1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:17.1 nTPM
HPA:17.1 nTPM
GTEx:20.7 nTPM
FANTOM5:17.0 Scaled Tags Per Million
Pig:7.6 nTPM
Mouse:19.4 nTPM
Allen mouse:3.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA074990
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 17.1
Sample id Sample description nTPM
Hippocampus
nTPM: 14.6
2148 Female, age 91, left hemisphere 18.5
2529 Female, age 94, left hemisphere 17.7
1911 Female, age 85, right hemisphere 14.6
2621 Female, age 67, right hemisphere 14.1
1898 Male, age 80, left hemisphere 12.2
1855 Male, age 76, left hemisphere 10.2
Dentate gyrus
nTPM: 16.0
2531 Female, age 67, both hemispheres 19.5
2530 Female, age 94, left hemisphere 16.4
1927 Female, age 91, both hemispheres 16.1
2528 Male, age 74, both hemispheres 16.0
2246 Female, age 85, both hemispheres 14.6
2010 Male, age 76, both hemispheres 13.7
Entorhinal gyrus
nTPM: 17.1
2764 Male, age 80, right hemisphere 20.6
2613 Female, age 94, left hemisphere 20.4
2686 Male, age 75, right hemisphere 17.9
2117 Female, age 91, right hemisphere 17.2
1938 Female, age 85, left hemisphere 13.8
1787 Male, age 76, left hemisphere 12.6
Hippocampus, CA1
nTPM: 15.0
2082 Female, age 91, right hemisphere 18.4
1873 Female, age 85, both hemispheres 16.1
2749 Male, age 80, left hemisphere 14.9
2527 Male, age 74, both hemispheres 14.1
2045 Male, age 76, both hemispheres 11.8
Hippocampus, CA2
nTPM: 15.8
1963 Male, age 80, left hemisphere 18.3
2437 Female, age 94, left hemisphere 17.9
2113 Female, age 91, right hemisphere 16.4
1940 Female, age 85, left hemisphere 15.5
2249 Male, age 74, both hemispheres 15.1
1892 Male, age 76, both hemispheres 11.4
Hippocampus, CA3
nTPM: 15.2
2620 Female, age 94, left hemisphere 22.6
2861 Female, age 67, both hemispheres 17.4
1891 Female, age 85, both hemispheres 14.4
2137 Male, age 80, left hemisphere 13.4
2436 Male, age 74, both hemispheres 12.7
1867 Male, age 76, both hemispheres 10.8
Parahippocampal cortex
nTPM: 15.2
2622 Female, age 67, right hemisphere 18.1
1990 Female, age 91, right hemisphere 17.3
2532 Female, age 72, left hemisphere 17.1
2693 Female, age 94, both hemispheres 16.9
2018 Male, age 76, both hemispheres 15.2
2692 Male, age 74, both hemispheres 14.6
2245 Female, age 91, both hemispheres 14.5
1933 Female, age 85, both hemispheres 14.2
1850 Male, age 80, both hemispheres 12.4
2250 Female, age 67, right hemisphere 11.7
Perirhinal gyrus
nTPM: 13.6
2848 Male, age 76, right hemisphere 14.1
2521 Female, age 94, right hemisphere 13.9
1841 Female, age 85, right hemisphere 13.5
1847 Female, age 91, left hemisphere 13.5
1794 Male, age 80, right hemisphere 13.0
Subiculum
nTPM: 16.6
1901 Male, age 80, both hemispheres 18.2
2729 Female, age 91, right hemisphere 17.3
2438 Female, age 94, left hemisphere 16.6
2042 Male, age 76, both hemispheres 16.3
1977 Female, age 85, both hemispheres 16.1
2619 Male, age 74, both hemispheres 15.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 20.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 20.7
Samples: 197

Max nTPM: 31.0
Min nTPM: 9.0
Std nTPM: 4.3
Median nTPM: 21.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 31.0
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 30.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 30.3
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 29.8
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 29.4
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 29.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 28.5
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 28.3
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 28.2
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 28.1
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 28.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 17.0
FF:10153-102I9 76 years, female 18.4
FF:10169-103B7 60 years, female 15.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 7.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 7.2
Samples: 4

Max nTPM: 8.5
Min nTPM: 5.3
Sample A Female 8.5
Sample B Female 7.5
Sample C Male 7.5
Sample D Male 5.3
Entorhinal cortex
nTPM: 7.4
Samples: 4

Max nTPM: 8.4
Min nTPM: 6.7
Sample A Female 7.2
Sample B Female 7.2
Sample C Male 8.4
Sample D Male 6.7
Subiculum
nTPM: 7.0
Samples: 4

Max nTPM: 8.5
Min nTPM: 5.6
Sample A Female 8.5
Sample B Female 7.1
Sample C Male 6.7
Sample D Male 5.6
Ventral hippocampus
nTPM: 7.6
Samples: 4

Max nTPM: 9.4
Min nTPM: 6.3
Sample A Female 7.2
Sample B Female 6.3
Sample C Male 9.4
Sample D Male 7.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 19.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 18.0
Samples: 4

Max nTPM: 19.1
Min nTPM: 17.3
Sample A Male 19.1
Sample B Male 17.4
Sample C Female 18.2
Sample D Female 17.3
Hippocampal formation
nTPM: 19.4
Samples: 4

Max nTPM: 20.5
Min nTPM: 17.9
Sample A Male 20.2
Sample B Male 18.9
Sample C Female 20.5
Sample D Female 17.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.0
68845191 Antisense, RP_050224_01_C05, Mouse strain C57BL/6J (56 days, male) 3.0

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