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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.5 nTPM
HPA:21.5 nTPM
GTEx:20.0 nTPM
FANTOM5:49.8 Scaled Tags Per Million
Pig:27.0 nTPM
Mouse:21.7 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.4
2411 Female, age 72, unknown 21.8
2019 Male, age 18, unknown 21.3
1870 Female, age 42, unknown 21.2
2219 Male, age 76, both hemispheres 20.9
1827 Male, age 72, unknown 20.3
1830 Male, age 51, unknown 20.0
1833 Male, age 53, unknown 19.8
2586 Male, age 75, left hemisphere 19.8
2828 Female, age 72, unknown 19.4
2666 Male, age 74, left hemisphere 19.1
Dorsal raphe nucleus
nTPM: 20.9
2750 Male, age 76, both hemispheres 21.7
2047 Male, age 72, unknown 20.8
2298 Female, age 72, unknown 20.8
1828 Male, age 53, unknown 20.6
2016 Female, age 72, unknown 20.6
Inferior colliculus
nTPM: 20.4
2097 Female, age 72, unknown 21.1
1890 Male, age 53, unknown 20.7
1848 Female, age 42, unknown 20.0
2849 Male, age 72, unknown 19.6
Median raphe nucleus
nTPM: 21.5
2220 Male, age 76, midline 21.5
Pedunculopontine tegmental nucleus
nTPM: 21.0
2334 Male, age 80, both hemispheres 21.5
1921 Female, age 85, both hemispheres 20.9
2338 Male, age 61, both hemispheres 20.5
Periaquaductal grey, anterior
nTPM: 20.6
1947 Male, age 18, unknown 21.2
2502 Female, age 75, unknown 20.7
1795 Male, age 51, unknown 20.0
Periaquaductal grey, dorsal
nTPM: 19.7
2464 Female, age 72, unknown 20.3
1840 Male, age 53, unknown 20.1
2850 Male, age 76, both hemispheres 19.3
1831 Male, age 72, unknown 19.1
Periaquaductal grey, lateral
nTPM: 19.3
2272 Male, age 74, both hemispheres 19.8
2140 Male, age 76, both hemispheres 19.3
2053 Male, age 18, unknown 18.9
Pretectal area
nTPM: 20.4
2007 Male, age 72, unknown 22.3
1816 Male, age 51, unknown 21.3
1944 Female, age 72, unknown 21.0
2667 Female, age 75, unknown 20.5
1817 Female, age 42, unknown 20.4
2273 Male, age 74, both hemispheres 20.3
1815 Male, age 53, unknown 20.1
2224 Female, age 72, unknown 20.1
2316 Male, age 76, right hemisphere 19.9
2825 Male, age 18, unknown 19.8
2407 Male, age 75, both hemispheres 18.2
Red nucleus
nTPM: 20.7
2725 Female, age 75, unknown 22.3
2503 Female, age 72, unknown 21.9
2588 Male, age 74, left hemisphere 21.8
1904 Male, age 53, unknown 21.2
1954 Female, age 42, unknown 21.1
1821 Female, age 72, unknown 20.8
2227 Male, age 72, unknown 20.5
2785 Male, age 18, unknown 20.4
1865 Male, age 51, unknown 20.2
2769 Male, age 72, unknown 20.1
2823 Male, age 76, right hemisphere 20.1
2584 Male, age 75, left hemisphere 18.5
Substantia nigra
nTPM: 20.9
1916 Female, age 42, unknown 22.1
1851 Male, age 51, unknown 21.8
2409 Female, age 72, unknown 21.7
2241 Male, age 72, unknown 21.6
1941 Male, age 53, unknown 21.2
1889 Female, age 72, unknown 21.0
2699 Male, age 18, unknown 20.7
2665 Male, age 74, both hemispheres 20.0
2590 Female, age 75, unknown 19.3
2583 Male, age 75, right hemisphere 19.2
Superior colliculus
nTPM: 20.1
1796 Male, age 53, unknown 20.6
1895 Male, age 76, right hemisphere 20.5
2587 Male, age 74, left hemisphere 20.4
1839 Male, age 51, unknown 20.3
2087 Female, age 72, unknown 20.2
1913 Female, age 42, unknown 20.1
2261 Male, age 18, unknown 20.0
2668 Female, age 75, unknown 19.9
1995 Male, age 72, unknown 19.7
2664 Male, age 75, both hemispheres 18.9
Ventral tegmental area
nTPM: 21.0
2410 Female, age 72, unknown 21.7
1915 Female, age 42, unknown 21.5
2223 Female, age 72, unknown 21.4
2218 Male, age 76, both hemispheres 21.1
1942 Male, age 51, unknown 20.3
2021 Male, age 53, unknown 19.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.0
Samples: 139

Max nTPM: 40.2
Min nTPM: 11.9
Std nTPM: 3.9
Median nTPM: 19.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 40.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 34.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 33.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 31.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 30.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 30.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 27.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 27.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 25.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 25.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 25.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 49.8
FF:10158-103A5 76 years, female 49.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.0
Pig sample Sample description nTPM
Midbrain
nTPM: 27.0
Samples: 4

Max nTPM: 32.1
Min nTPM: 25.1
Sample A Female 25.6
Sample B Female 25.1
Sample C Male 32.1
Sample D Male 25.2
Periaqueductal gray
nTPM: 22.0
Samples: 3

Max nTPM: 23.6
Min nTPM: 19.7
Sample B Female 22.8
Sample C Male 23.6
Sample D Male 19.7
Substantia nigra
nTPM: 25.0
Samples: 4

Max nTPM: 27.2
Min nTPM: 22.4
Sample A Female 27.2
Sample B Female 22.4
Sample C Male 26.7
Sample D Male 23.8
Superior colliculi
nTPM: 26.5
Samples: 4

Max nTPM: 31.5
Min nTPM: 21.8
Sample A Female 25.8
Sample B Female 21.8
Sample C Male 31.5
Sample D Male 27.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.7
Samples: 4

Max nTPM: 22.3
Min nTPM: 21.1
Sample A Male 21.1
Sample B Male 22.3
Sample C Female 21.7
Sample D Female 21.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69672276 Antisense, RP_050428_03_D06, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.