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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:67.1 nTPM
HPA:67.1 nTPM
GTEx:40.9 nTPM
FANTOM5:28.4 Scaled Tags Per Million
Pig:9.9 nTPM
Mouse:0.1 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 67.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.7
2219 Male, age 76, both hemispheres 68.5
1870 Female, age 42, unknown 67.7
2586 Male, age 75, left hemisphere 67.4
2019 Male, age 18, unknown 66.3
2411 Female, age 72, unknown 65.9
1830 Male, age 51, unknown 65.8
1833 Male, age 53, unknown 65.7
2828 Female, age 72, unknown 63.5
1827 Male, age 72, unknown 63.4
2666 Male, age 74, left hemisphere 63.1
Dorsal raphe nucleus
nTPM: 64.4
2750 Male, age 76, both hemispheres 69.5
2298 Female, age 72, unknown 64.5
1828 Male, age 53, unknown 63.2
2016 Female, age 72, unknown 62.8
2047 Male, age 72, unknown 61.9
Inferior colliculus
nTPM: 64.0
2097 Female, age 72, unknown 65.6
1848 Female, age 42, unknown 63.9
1890 Male, age 53, unknown 63.5
2849 Male, age 72, unknown 62.9
Median raphe nucleus
nTPM: 64.3
2220 Male, age 76, midline 64.3
Pedunculopontine tegmental nucleus
nTPM: 66.0
1921 Female, age 85, both hemispheres 67.4
2338 Male, age 61, both hemispheres 65.4
2334 Male, age 80, both hemispheres 65.2
Periaquaductal grey, anterior
nTPM: 64.3
1947 Male, age 18, unknown 64.9
2502 Female, age 75, unknown 64.4
1795 Male, age 51, unknown 63.5
Periaquaductal grey, dorsal
nTPM: 63.1
2464 Female, age 72, unknown 65.7
1840 Male, age 53, unknown 62.7
1831 Male, age 72, unknown 62.6
2850 Male, age 76, both hemispheres 61.2
Periaquaductal grey, lateral
nTPM: 63.7
2053 Male, age 18, unknown 65.7
2272 Male, age 74, both hemispheres 63.2
2140 Male, age 76, both hemispheres 62.2
Pretectal area
nTPM: 64.2
2224 Female, age 72, unknown 66.9
2407 Male, age 75, both hemispheres 66.1
2316 Male, age 76, right hemisphere 65.3
1815 Male, age 53, unknown 64.9
2007 Male, age 72, unknown 64.6
1944 Female, age 72, unknown 63.9
2825 Male, age 18, unknown 63.9
1816 Male, age 51, unknown 63.2
1817 Female, age 42, unknown 63.1
2667 Female, age 75, unknown 62.6
2273 Male, age 74, both hemispheres 61.8
Red nucleus
nTPM: 67.1
2823 Male, age 76, right hemisphere 72.9
1865 Male, age 51, unknown 69.1
2769 Male, age 72, unknown 69.1
1904 Male, age 53, unknown 68.9
2584 Male, age 75, left hemisphere 67.7
2227 Male, age 72, unknown 67.2
1821 Female, age 72, unknown 67.1
1954 Female, age 42, unknown 65.6
2785 Male, age 18, unknown 65.6
2503 Female, age 72, unknown 64.5
2725 Female, age 75, unknown 64.5
2588 Male, age 74, left hemisphere 63.5
Substantia nigra
nTPM: 63.6
2583 Male, age 75, right hemisphere 68.8
2590 Female, age 75, unknown 65.7
2241 Male, age 72, unknown 64.1
1851 Male, age 51, unknown 63.3
1941 Male, age 53, unknown 63.2
1889 Female, age 72, unknown 63.1
2665 Male, age 74, both hemispheres 62.6
2699 Male, age 18, unknown 62.3
1916 Female, age 42, unknown 61.8
2409 Female, age 72, unknown 61.3
Superior colliculus
nTPM: 65.1
1995 Male, age 72, unknown 68.9
1913 Female, age 42, unknown 67.8
2668 Female, age 75, unknown 66.0
1839 Male, age 51, unknown 65.7
1895 Male, age 76, right hemisphere 64.3
2087 Female, age 72, unknown 64.2
2587 Male, age 74, left hemisphere 63.9
2261 Male, age 18, unknown 63.7
1796 Male, age 53, unknown 63.3
2664 Male, age 75, both hemispheres 62.7
Ventral tegmental area
nTPM: 65.1
2223 Female, age 72, unknown 68.8
2021 Male, age 53, unknown 65.8
2218 Male, age 76, both hemispheres 65.1
1942 Male, age 51, unknown 64.1
1915 Female, age 42, unknown 63.9
2410 Female, age 72, unknown 63.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 40.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.9
Samples: 139

Max nTPM: 166.5
Min nTPM: 3.9
Std nTPM: 31.3
Median nTPM: 31.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 166.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 166.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 146.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 144.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 144.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 122.2
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 103.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 99.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 95.2
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 93.5
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 90.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.4
FF:10158-103A5 76 years, female 28.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.9
Pig sample Sample description nTPM
Midbrain
nTPM: 7.3
Samples: 4

Max nTPM: 11.3
Min nTPM: 1.1
Sample A Female 1.1
Sample B Female 9.3
Sample C Male 11.3
Sample D Male 7.5
Periaqueductal gray
nTPM: 7.5
Samples: 3

Max nTPM: 11.3
Min nTPM: 5.0
Sample B Female 6.1
Sample C Male 11.3
Sample D Male 5.0
Substantia nigra
nTPM: 9.9
Samples: 4

Max nTPM: 15.5
Min nTPM: 1.9
Sample A Female 15.3
Sample B Female 6.8
Sample C Male 15.5
Sample D Male 1.9
Superior colliculi
nTPM: 5.1
Samples: 4

Max nTPM: 7.7
Min nTPM: 2.6
Sample A Female 7.7
Sample B Female 2.6
Sample C Male 5.2
Sample D Male 5.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Male 0.1
Sample B Male 0.0
Sample C Female 0.2
Sample D Female 0.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71920279 Antisense, RP_051012_03_B10, Mouse strain C57BL/6J (56 days, male) 0.0

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