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PCGF3
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:18.9 nTPM
HPA:18.9 nTPM
GTEx:24.7 nTPM
FANTOM5:34.8 Scaled Tags Per Million
Pig:29.3 nTPM
Mouse:13.2 nTPM
Allen mouse:5.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA061879
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 18.9
Sample id Sample description nTPM
Hippocampus
nTPM: 17.4
2148 Female, age 91, left hemisphere 20.4
1911 Female, age 85, right hemisphere 17.5
1898 Male, age 80, left hemisphere 17.1
1855 Male, age 76, left hemisphere 16.8
2529 Female, age 94, left hemisphere 16.6
2621 Female, age 67, right hemisphere 16.0
Dentate gyrus
nTPM: 18.9
2531 Female, age 67, both hemispheres 20.8
1927 Female, age 91, both hemispheres 20.7
2010 Male, age 76, both hemispheres 19.8
2246 Female, age 85, both hemispheres 18.4
2530 Female, age 94, left hemisphere 17.1
2528 Male, age 74, both hemispheres 16.3
Entorhinal gyrus
nTPM: 16.2
1787 Male, age 76, left hemisphere 17.2
2686 Male, age 75, right hemisphere 16.5
2613 Female, age 94, left hemisphere 16.2
2764 Male, age 80, right hemisphere 16.1
1938 Female, age 85, left hemisphere 15.8
2117 Female, age 91, right hemisphere 15.4
Hippocampus, CA1
nTPM: 18.6
1873 Female, age 85, both hemispheres 20.6
2045 Male, age 76, both hemispheres 20.1
2749 Male, age 80, left hemisphere 19.2
2082 Female, age 91, right hemisphere 17.8
2527 Male, age 74, both hemispheres 15.4
Hippocampus, CA2
nTPM: 18.3
1892 Male, age 76, both hemispheres 20.7
1963 Male, age 80, left hemisphere 20.4
2113 Female, age 91, right hemisphere 18.1
1940 Female, age 85, left hemisphere 17.4
2437 Female, age 94, left hemisphere 17.1
2249 Male, age 74, both hemispheres 16.2
Hippocampus, CA3
nTPM: 18.0
2620 Female, age 94, left hemisphere 20.5
2137 Male, age 80, left hemisphere 20.3
2861 Female, age 67, both hemispheres 18.9
1891 Female, age 85, both hemispheres 17.5
1867 Male, age 76, both hemispheres 16.6
2436 Male, age 74, both hemispheres 14.2
Parahippocampal cortex
nTPM: 16.6
2693 Female, age 94, both hemispheres 19.0
2622 Female, age 67, right hemisphere 17.5
1933 Female, age 85, both hemispheres 17.2
1850 Male, age 80, both hemispheres 16.7
2250 Female, age 67, right hemisphere 16.7
2245 Female, age 91, both hemispheres 16.5
2692 Male, age 74, both hemispheres 16.4
1990 Female, age 91, right hemisphere 16.2
2532 Female, age 72, left hemisphere 15.5
2018 Male, age 76, both hemispheres 14.9
Perirhinal gyrus
nTPM: 16.8
1841 Female, age 85, right hemisphere 19.1
2521 Female, age 94, right hemisphere 17.8
1794 Male, age 80, right hemisphere 16.7
1847 Female, age 91, left hemisphere 15.7
2848 Male, age 76, right hemisphere 14.7
Subiculum
nTPM: 17.5
1977 Female, age 85, both hemispheres 18.4
2438 Female, age 94, left hemisphere 18.4
2729 Female, age 91, right hemisphere 17.7
2042 Male, age 76, both hemispheres 17.0
1901 Male, age 80, both hemispheres 16.7
2619 Male, age 74, both hemispheres 16.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 24.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 24.7
Samples: 197

Max nTPM: 42.4
Min nTPM: 11.9
Std nTPM: 5.5
Median nTPM: 24.1
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 42.4
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 41.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 38.9
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 38.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 37.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 37.3
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 37.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 36.3
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 36.1
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 35.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 35.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 34.8
FF:10169-103B7 60 years, female 36.6
FF:10153-102I9 76 years, female 33.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 29.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 23.3
Samples: 4

Max nTPM: 24.0
Min nTPM: 22.6
Sample A Female 22.6
Sample B Female 23.2
Sample C Male 24.0
Sample D Male 23.4
Entorhinal cortex
nTPM: 29.3
Samples: 4

Max nTPM: 31.0
Min nTPM: 27.8
Sample A Female 31.0
Sample B Female 28.9
Sample C Male 29.5
Sample D Male 27.8
Subiculum
nTPM: 25.5
Samples: 4

Max nTPM: 30.2
Min nTPM: 23.3
Sample A Female 30.2
Sample B Female 24.7
Sample C Male 23.7
Sample D Male 23.3
Ventral hippocampus
nTPM: 22.2
Samples: 4

Max nTPM: 24.3
Min nTPM: 19.4
Sample A Female 19.4
Sample B Female 21.2
Sample C Male 24.3
Sample D Male 23.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 13.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 13.2
Samples: 4

Max nTPM: 15.4
Min nTPM: 12.2
Sample A Male 12.6
Sample B Male 12.6
Sample C Female 12.2
Sample D Female 15.4
Hippocampal formation
nTPM: 12.2
Samples: 4

Max nTPM: 13.4
Min nTPM: 11.0
Sample A Male 11.6
Sample B Male 12.7
Sample C Female 13.4
Sample D Female 11.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.5
69262320 Antisense, RP_050303_01_H12, Mouse strain C57BL/6J (56 days, male) 5.5

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