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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.1 nTPM
HPA:37.1 nTPM
GTEx:84.3 nTPM
FANTOM5:65.2 Scaled Tags Per Million
Pig:42.9 nTPM
Mouse:112.9 nTPM
Allen mouse:14.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.5
2586 Male, age 75, left hemisphere 49.3
2666 Male, age 74, left hemisphere 40.5
1870 Female, age 42, unknown 37.2
2828 Female, age 72, unknown 36.7
2019 Male, age 18, unknown 36.2
2411 Female, age 72, unknown 36.2
1827 Male, age 72, unknown 35.4
1830 Male, age 51, unknown 33.3
1833 Male, age 53, unknown 32.9
2219 Male, age 76, both hemispheres 27.5
Dorsal raphe nucleus
nTPM: 36.6
2298 Female, age 72, unknown 40.4
1828 Male, age 53, unknown 37.0
2047 Male, age 72, unknown 36.7
2016 Female, age 72, unknown 34.8
2750 Male, age 76, both hemispheres 34.1
Inferior colliculus
nTPM: 32.9
1848 Female, age 42, unknown 34.2
2097 Female, age 72, unknown 33.9
1890 Male, age 53, unknown 32.1
2849 Male, age 72, unknown 31.5
Median raphe nucleus
nTPM: 33.8
2220 Male, age 76, midline 33.8
Pedunculopontine tegmental nucleus
nTPM: 37.1
2338 Male, age 61, both hemispheres 43.6
2334 Male, age 80, both hemispheres 35.9
1921 Female, age 85, both hemispheres 31.7
Periaquaductal grey, anterior
nTPM: 36.7
1947 Male, age 18, unknown 37.6
2502 Female, age 75, unknown 36.7
1795 Male, age 51, unknown 35.8
Periaquaductal grey, dorsal
nTPM: 32.0
1840 Male, age 53, unknown 33.7
2850 Male, age 76, both hemispheres 33.5
1831 Male, age 72, unknown 32.5
2464 Female, age 72, unknown 28.4
Periaquaductal grey, lateral
nTPM: 32.0
2272 Male, age 74, both hemispheres 32.5
2053 Male, age 18, unknown 32.2
2140 Male, age 76, both hemispheres 31.2
Pretectal area
nTPM: 34.9
1817 Female, age 42, unknown 39.5
2007 Male, age 72, unknown 38.1
1815 Male, age 53, unknown 37.9
2224 Female, age 72, unknown 36.6
1944 Female, age 72, unknown 36.3
2825 Male, age 18, unknown 36.0
1816 Male, age 51, unknown 35.9
2273 Male, age 74, both hemispheres 34.9
2667 Female, age 75, unknown 33.1
2407 Male, age 75, both hemispheres 28.5
2316 Male, age 76, right hemisphere 27.3
Red nucleus
nTPM: 36.0
1821 Female, age 72, unknown 39.7
1954 Female, age 42, unknown 39.4
2725 Female, age 75, unknown 37.1
2503 Female, age 72, unknown 37.0
2584 Male, age 75, left hemisphere 37.0
1904 Male, age 53, unknown 36.7
2785 Male, age 18, unknown 36.6
2769 Male, age 72, unknown 36.2
1865 Male, age 51, unknown 35.8
2227 Male, age 72, unknown 35.2
2588 Male, age 74, left hemisphere 31.4
2823 Male, age 76, right hemisphere 30.3
Substantia nigra
nTPM: 35.5
1916 Female, age 42, unknown 41.2
1851 Male, age 51, unknown 37.9
2665 Male, age 74, both hemispheres 37.9
2583 Male, age 75, right hemisphere 37.8
1889 Female, age 72, unknown 37.3
2590 Female, age 75, unknown 36.1
1941 Male, age 53, unknown 33.1
2699 Male, age 18, unknown 32.8
2241 Male, age 72, unknown 30.6
2409 Female, age 72, unknown 30.6
Superior colliculus
nTPM: 33.7
1995 Male, age 72, unknown 37.3
1913 Female, age 42, unknown 36.8
1796 Male, age 53, unknown 35.1
2664 Male, age 75, both hemispheres 33.8
2087 Female, age 72, unknown 33.3
2668 Female, age 75, unknown 33.2
2261 Male, age 18, unknown 32.9
1839 Male, age 51, unknown 32.5
2587 Male, age 74, left hemisphere 31.9
1895 Male, age 76, right hemisphere 29.9
Ventral tegmental area
nTPM: 36.4
1915 Female, age 42, unknown 39.9
1942 Male, age 51, unknown 37.7
2410 Female, age 72, unknown 36.6
2021 Male, age 53, unknown 35.0
2223 Female, age 72, unknown 34.8
2218 Male, age 76, both hemispheres 34.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 84.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 84.3
Samples: 139

Max nTPM: 175.1
Min nTPM: 40.8
Std nTPM: 22.1
Median nTPM: 80.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 175.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 160.9
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 159.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 136.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 133.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 132.4
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 126.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 123.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 117.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 117.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 115.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 65.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 65.2
FF:10158-103A5 76 years, female 65.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 42.9
Pig sample Sample description nTPM
Midbrain
nTPM: 36.4
Samples: 4

Max nTPM: 57.4
Min nTPM: 24.3
Sample A Female 57.4
Sample B Female 29.0
Sample C Male 35.0
Sample D Male 24.3
Periaqueductal gray
nTPM: 27.6
Samples: 3

Max nTPM: 30.6
Min nTPM: 24.3
Sample B Female 28.0
Sample C Male 30.6
Sample D Male 24.3
Substantia nigra
nTPM: 36.3
Samples: 4

Max nTPM: 43.4
Min nTPM: 30.7
Sample A Female 43.4
Sample B Female 38.8
Sample C Male 32.2
Sample D Male 30.7
Superior colliculi
nTPM: 42.9
Samples: 4

Max nTPM: 61.4
Min nTPM: 30.9
Sample A Female 46.3
Sample B Female 61.4
Sample C Male 32.9
Sample D Male 30.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 112.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 112.9
Samples: 4

Max nTPM: 116.5
Min nTPM: 109.2
Sample A Male 116.5
Sample B Male 109.2
Sample C Female 111.8
Sample D Female 114.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.9
74658245 Antisense, RP_060220_02_D11, Mouse strain C57BL/6J (56 days, male) 15.6
68443256 Antisense, RP_050111_01_F06, Mouse strain C57BL/6J (56 days, male) 14.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.