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PSMD13
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:50.3 nTPM
HPA:50.3 nTPM
GTEx:18.6 nTPM
FANTOM5:69.1 Scaled Tags Per Million
Pig:55.5 nTPM
Mouse:43.1 nTPM
Allen mouse:3.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA038691Antibody HPA038692
Glial cells MediumNot detected
Neuronal cells HighMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 50.3
Sample id Sample description nTPM
Hippocampus
nTPM: 48.4
1898 Male, age 80, left hemisphere 54.6
2529 Female, age 94, left hemisphere 48.8
1855 Male, age 76, left hemisphere 48.0
1911 Female, age 85, right hemisphere 46.5
2621 Female, age 67, right hemisphere 46.4
2148 Female, age 91, left hemisphere 46.2
Dentate gyrus
nTPM: 48.6
2530 Female, age 94, left hemisphere 51.4
2010 Male, age 76, both hemispheres 49.8
1927 Female, age 91, both hemispheres 49.2
2528 Male, age 74, both hemispheres 47.5
2246 Female, age 85, both hemispheres 47.3
2531 Female, age 67, both hemispheres 46.3
Entorhinal gyrus
nTPM: 48.7
2764 Male, age 80, right hemisphere 50.8
1938 Female, age 85, left hemisphere 49.9
1787 Male, age 76, left hemisphere 49.6
2117 Female, age 91, right hemisphere 48.0
2613 Female, age 94, left hemisphere 47.3
2686 Male, age 75, right hemisphere 46.9
Hippocampus, CA1
nTPM: 49.8
2749 Male, age 80, left hemisphere 56.7
1873 Female, age 85, both hemispheres 50.0
2527 Male, age 74, both hemispheres 49.2
2082 Female, age 91, right hemisphere 47.2
2045 Male, age 76, both hemispheres 46.1
Hippocampus, CA2
nTPM: 49.2
1892 Male, age 76, both hemispheres 53.1
1963 Male, age 80, left hemisphere 52.2
2249 Male, age 74, both hemispheres 48.6
1940 Female, age 85, left hemisphere 47.2
2437 Female, age 94, left hemisphere 47.0
2113 Female, age 91, right hemisphere 46.9
Hippocampus, CA3
nTPM: 48.1
1867 Male, age 76, both hemispheres 51.3
2137 Male, age 80, left hemisphere 50.9
1891 Female, age 85, both hemispheres 47.5
2436 Male, age 74, both hemispheres 47.1
2620 Female, age 94, left hemisphere 46.6
2861 Female, age 67, both hemispheres 45.5
Parahippocampal cortex
nTPM: 47.4
1850 Male, age 80, both hemispheres 50.2
1933 Female, age 85, both hemispheres 50.0
1990 Female, age 91, right hemisphere 49.4
2245 Female, age 91, both hemispheres 48.8
2250 Female, age 67, right hemisphere 48.2
2018 Male, age 76, both hemispheres 46.4
2532 Female, age 72, left hemisphere 46.3
2692 Male, age 74, both hemispheres 46.2
2693 Female, age 94, both hemispheres 45.7
2622 Female, age 67, right hemisphere 43.3
Perirhinal gyrus
nTPM: 50.3
1847 Female, age 91, left hemisphere 53.6
1794 Male, age 80, right hemisphere 52.4
1841 Female, age 85, right hemisphere 50.3
2521 Female, age 94, right hemisphere 48.0
2848 Male, age 76, right hemisphere 47.4
Subiculum
nTPM: 47.2
1901 Male, age 80, both hemispheres 50.2
1977 Female, age 85, both hemispheres 49.5
2619 Male, age 74, both hemispheres 47.4
2438 Female, age 94, left hemisphere 45.6
2042 Male, age 76, both hemispheres 45.3
2729 Female, age 91, right hemisphere 45.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 18.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 18.6
Samples: 197

Max nTPM: 40.9
Min nTPM: 6.1
Std nTPM: 6.3
Median nTPM: 17.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 40.9
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 39.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 37.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 37.1
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 35.3
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 31.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 31.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 31.4
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 31.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 30.3
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 29.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 69.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 69.1
FF:10169-103B7 60 years, female 87.8
FF:10153-102I9 76 years, female 50.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 55.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 55.5
Samples: 4

Max nTPM: 72.5
Min nTPM: 43.7
Sample A Female 72.5
Sample B Female 57.6
Sample C Male 48.2
Sample D Male 43.7
Entorhinal cortex
nTPM: 43.4
Samples: 4

Max nTPM: 52.4
Min nTPM: 33.0
Sample A Female 45.6
Sample B Female 52.4
Sample C Male 42.4
Sample D Male 33.0
Subiculum
nTPM: 43.5
Samples: 4

Max nTPM: 55.9
Min nTPM: 37.6
Sample A Female 55.9
Sample B Female 40.6
Sample C Male 37.6
Sample D Male 39.8
Ventral hippocampus
nTPM: 49.7
Samples: 4

Max nTPM: 57.8
Min nTPM: 34.1
Sample A Female 57.8
Sample B Female 34.1
Sample C Male 54.8
Sample D Male 51.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 43.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 39.3
Samples: 4

Max nTPM: 43.5
Min nTPM: 32.8
Sample A Male 32.8
Sample B Male 41.4
Sample C Female 43.5
Sample D Female 39.5
Hippocampal formation
nTPM: 43.1
Samples: 4

Max nTPM: 46.6
Min nTPM: 41.5
Sample A Male 46.6
Sample B Male 41.8
Sample C Female 41.5
Sample D Female 42.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.1
74882718 Antisense, RP_060315_04_G06, Mouse strain C57BL/6J (56 days, male) 3.5
69817432 Antisense, RP_050510_03_D04, Mouse strain C57BL/6J (56 days, male) 2.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.