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HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.4 nTPM
HPA:9.4 nTPM
GTEx:8.9 nTPM
FANTOM5:18.1 Scaled Tags Per Million
Pig:21.2 nTPM
Mouse:42.3 nTPM
Allen mouse:0.5 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 9.4
Sample id Sample description nTPM
Hippocampus
nTPM: 6.0
1898 Male, age 80, left hemisphere 8.3
2529 Female, age 94, left hemisphere 6.3
2148 Female, age 91, left hemisphere 5.7
2621 Female, age 67, right hemisphere 5.7
1855 Male, age 76, left hemisphere 5.3
1911 Female, age 85, right hemisphere 4.8
Dentate gyrus
nTPM: 6.4
1927 Female, age 91, both hemispheres 9.0
2531 Female, age 67, both hemispheres 6.8
2528 Male, age 74, both hemispheres 6.2
2246 Female, age 85, both hemispheres 5.5
2530 Female, age 94, left hemisphere 5.5
2010 Male, age 76, both hemispheres 5.3
Entorhinal gyrus
nTPM: 8.3
1938 Female, age 85, left hemisphere 11.4
2613 Female, age 94, left hemisphere 11.0
1787 Male, age 76, left hemisphere 7.9
2686 Male, age 75, right hemisphere 6.9
2764 Male, age 80, right hemisphere 6.9
2117 Female, age 91, right hemisphere 5.8
Hippocampus, CA1
nTPM: 7.2
2749 Male, age 80, left hemisphere 10.4
2045 Male, age 76, both hemispheres 7.5
2527 Male, age 74, both hemispheres 7.1
1873 Female, age 85, both hemispheres 6.6
2082 Female, age 91, right hemisphere 4.7
Hippocampus, CA2
nTPM: 6.8
1892 Male, age 76, both hemispheres 10.9
2437 Female, age 94, left hemisphere 7.7
2249 Male, age 74, both hemispheres 6.0
1963 Male, age 80, left hemisphere 5.9
2113 Female, age 91, right hemisphere 5.2
1940 Female, age 85, left hemisphere 5.0
Hippocampus, CA3
nTPM: 7.9
1867 Male, age 76, both hemispheres 9.8
2137 Male, age 80, left hemisphere 9.7
2620 Female, age 94, left hemisphere 9.0
1891 Female, age 85, both hemispheres 7.4
2861 Female, age 67, both hemispheres 6.2
2436 Male, age 74, both hemispheres 5.3
Parahippocampal cortex
nTPM: 8.1
2693 Female, age 94, both hemispheres 10.5
1850 Male, age 80, both hemispheres 10.2
1990 Female, age 91, right hemisphere 9.6
2250 Female, age 67, right hemisphere 7.8
1933 Female, age 85, both hemispheres 7.7
2532 Female, age 72, left hemisphere 7.7
2622 Female, age 67, right hemisphere 7.5
2245 Female, age 91, both hemispheres 7.0
2692 Male, age 74, both hemispheres 7.0
2018 Male, age 76, both hemispheres 6.1
Perirhinal gyrus
nTPM: 9.4
2848 Male, age 76, right hemisphere 10.4
1847 Female, age 91, left hemisphere 9.9
1841 Female, age 85, right hemisphere 9.8
1794 Male, age 80, right hemisphere 8.4
2521 Female, age 94, right hemisphere 8.4
Subiculum
nTPM: 7.2
2438 Female, age 94, left hemisphere 10.4
1901 Male, age 80, both hemispheres 8.9
1977 Female, age 85, both hemispheres 8.3
2619 Male, age 74, both hemispheres 5.6
2729 Female, age 91, right hemisphere 5.4
2042 Male, age 76, both hemispheres 4.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 8.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 8.9
Samples: 197

Max nTPM: 20.1
Min nTPM: 4.3
Std nTPM: 2.6
Median nTPM: 8.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 20.1
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 19.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 19.0
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 17.8
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 16.4
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 16.0
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 15.7
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 14.8
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 14.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 14.0
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 13.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 18.1
FF:10153-102I9 76 years, female 18.4
FF:10169-103B7 60 years, female 17.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 21.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 17.7
Samples: 4

Max nTPM: 19.8
Min nTPM: 15.5
Sample A Female 19.8
Sample B Female 18.0
Sample C Male 17.5
Sample D Male 15.5
Entorhinal cortex
nTPM: 21.2
Samples: 4

Max nTPM: 23.0
Min nTPM: 19.9
Sample A Female 21.8
Sample B Female 23.0
Sample C Male 19.9
Sample D Male 20.0
Subiculum
nTPM: 17.8
Samples: 4

Max nTPM: 22.0
Min nTPM: 16.3
Sample A Female 22.0
Sample B Female 16.4
Sample C Male 16.4
Sample D Male 16.3
Ventral hippocampus
nTPM: 16.6
Samples: 4

Max nTPM: 17.9
Min nTPM: 15.8
Sample A Female 16.6
Sample B Female 15.8
Sample C Male 16.0
Sample D Male 17.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 42.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 39.5
Samples: 4

Max nTPM: 43.3
Min nTPM: 32.2
Sample A Male 43.0
Sample B Male 43.3
Sample C Female 39.6
Sample D Female 32.2
Hippocampal formation
nTPM: 42.3
Samples: 4

Max nTPM: 48.3
Min nTPM: 36.6
Sample A Male 40.3
Sample B Male 43.9
Sample C Female 48.3
Sample D Female 36.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.5
678689 Antisense, RP_040914_02_D08, Mouse strain C57BL/6J (56 days, male) 1.5
74000690 Antisense, RP_051219_02_E12, Mouse strain C57BL/6J (56 days, male) 0.1
71211752 Antisense, RP_050816_02_D03, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.