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KCNQ5
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:7.5 nTPM
HPA:7.5 nTPM
GTEx:13.7 nTPM
FANTOM5:36.1 Scaled Tags Per Million
Pig:24.0 nTPM
Mouse:38.0 nTPM
Allen mouse:6.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA016655
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 7.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.6
1854 Male, age 80, left hemisphere 7.4
2846 Female, age 79, unknown 7.0
2290 Female, age 72, unknown 6.1
1857 Female, age 85, left hemisphere 4.5
1781 Male, age 74, unknown 2.2
2289 Male, age 61, right hemisphere 1.8
2288 Male, age 75, left hemisphere 0.0
2481 Female, age 94, left hemisphere 0.0
Claustrum
nTPM: 0.5
2568 Male, age 61, both hemispheres 4.2
2491 Male, age 75, both hemispheres 0.3
1956 Male, age 74, unknown 0.0
2196 Female, age 79, unknown 0.0
2198 Male, age 80, both hemispheres 0.0
2284 Female, age 91, both hemispheres 0.0
2292 Female, age 85, both hemispheres 0.0
2392 Female, age 94, both hemispheres 0.0
2645 Female, age 72, unknown 0.0
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 7.5
1856 Female, age 91, right hemisphere 26.0
2824 Male, age 61, right hemisphere 18.3
1783 Male, age 74, unknown 13.1
1806 Female, age 85, left hemisphere 2.3
2286 Male, age 75, left hemisphere 0.0
2391 Female, age 94, left hemisphere 0.0
2698 Female, age 72, unknown 0.0
2732 Male, age 80, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.6
2393 Male, age 80, right hemisphere 2.4
2484 Female, age 94, left hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 1.7
2029 Male, age 61, right hemisphere 8.7
1812 Female, age 91, both hemispheres 0.2
1979 Male, age 74, unknown 0.0
2195 Female, age 85, both hemispheres 0.0
2775 Male, age 80, right hemisphere 0.0
Olfactory tubercle
nTPM: 2.6
1998 Female, age 91, both hemispheres 4.8
2856 Male, age 75, right hemisphere 3.0
2487 Female, age 94, left hemisphere 2.8
1846 Male, age 80, right hemisphere 0.0
Putamen
nTPM: 6.6
1838 Male, age 80, right hemisphere 14.7
1937 Female, age 91, right hemisphere 13.0
1829 Male, age 74, unknown 9.4
2466 Female, age 79, unknown 9.0
2482 Female, age 94, left hemisphere 0.0
2489 Female, age 72, unknown 0.0
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 1.8
2031 Female, age 72, unknown 7.4
1960 Male, age 74, unknown 5.1
2629 Female, age 94, right hemisphere 0.6
2009 Female, age 91, both hemispheres 0.0
2059 Female, age 85, both hemispheres 0.0
2199 Male, age 80, right hemisphere 0.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 13.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 10.7
Samples: 246

Max nTPM: 37.6
Min nTPM: 0.1
Std nTPM: 7.4
Median nTPM: 9.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 37.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 35.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 29.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 27.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 26.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 26.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 25.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 25.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 24.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 24.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 23.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 13.7
Samples: 246

Max nTPM: 39.8
Min nTPM: 0.0
Std nTPM: 8.3
Median nTPM: 14.3
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 39.8
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 35.3
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 34.7
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 30.2
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 29.3
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 28.2
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 27.6
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 27.4
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 27.4
GTEX-13OVL-0011-R6a-SM-5L3G4 50-59 years, male 27.3
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 27.3
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Brain - Putamen (basal ganglia)
Average nTPM: 9.4
Samples: 205

Max nTPM: 28.9
Min nTPM: 0.1
Std nTPM: 7.0
Median nTPM: 8.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 28.9
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 27.1
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 26.8
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 26.7
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 26.0
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 25.0
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 24.0
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 23.4
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 22.5
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 22.2
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 21.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 28.7
FF:10164-103B2 76 years, female 28.7
Globus pallidus
Scaled Tags Per Million: 6.3
FF:10175-103C4 60 years, female 8.6
FF:10161-103A8 76 years, female 3.9
Nucleus accumbens
Scaled Tags Per Million: 36.1
FF:10037-101F1 23-56 years, mixed 36.1
Putamen
Scaled Tags Per Million: 32.0
FF:10176-103C5 60 years, female 32.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 24.0
Pig sample Sample description nTPM
Caudate
nTPM: 24.0
Samples: 4

Max nTPM: 27.7
Min nTPM: 19.2
Sample A Female 19.2
Sample B Female 24.5
Sample C Male 27.7
Sample D Male 24.5
Putamen
nTPM: 20.0
Samples: 4

Max nTPM: 24.3
Min nTPM: 8.6
Sample A Female 8.6
Sample B Female 23.3
Sample C Male 23.7
Sample D Male 24.3
Septum
nTPM: 16.1
Samples: 4

Max nTPM: 27.2
Min nTPM: 6.6
Sample A Female 27.2
Sample B Female 22.6
Sample C Male 7.8
Sample D Male 6.6
Ventral pallidum
nTPM: 20.8
Samples: 4

Max nTPM: 32.7
Min nTPM: 12.9
Sample A Female 32.7
Sample B Female 14.7
Sample C Male 12.9
Sample D Male 22.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 38.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 38.0
Samples: 4

Max nTPM: 40.1
Min nTPM: 36.4
Sample A Male 40.1
Sample B Male 38.1
Sample C Female 36.4
Sample D Female 37.5
Septum
nTPM: 13.1
Samples: 4

Max nTPM: 15.2
Min nTPM: 11.8
Sample A Male 15.2
Sample B Male 11.8
Sample C Female 12.0
Sample D Female 13.2
Ventral forebrain
nTPM: 28.8
Samples: 4

Max nTPM: 31.8
Min nTPM: 26.5
Sample A Male 29.4
Sample B Male 26.5
Sample C Female 27.5
Sample D Female 31.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 6.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 6.8
72128745 Antisense, RP_051017_04_C01, Mouse strain C57BL/6J (56 days, male) 6.9
69258084 Antisense, RP_050331_03_G07, Mouse strain C57BL/6J (56 days, male) 6.8
Pallidum
Expression energy: 3.7
69258084 Antisense, RP_050331_03_G07, Mouse strain C57BL/6J (56 days, male) 5.2
72128745 Antisense, RP_051017_04_C01, Mouse strain C57BL/6J (56 days, male) 2.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.