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KCNIP4
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.4 nTPM
HPA:16.4 nTPM
GTEx:29.4 nTPM
FANTOM5:151.9 Scaled Tags Per Million
Pig:20.6 nTPM
Mouse:52.3 nTPM
Allen mouse:2.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 16.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.4
1781 Male, age 74, unknown 9.1
1857 Female, age 85, left hemisphere 6.3
1854 Male, age 80, left hemisphere 5.0
2846 Female, age 79, unknown 4.2
2290 Female, age 72, unknown 2.7
2288 Male, age 75, left hemisphere 0.0
2289 Male, age 61, right hemisphere 0.0
2481 Female, age 94, left hemisphere 0.0
Claustrum
nTPM: 14.2
2491 Male, age 75, both hemispheres 21.2
2568 Male, age 61, both hemispheres 20.7
2392 Female, age 94, both hemispheres 16.7
2284 Female, age 91, both hemispheres 16.4
2198 Male, age 80, both hemispheres 13.1
2196 Female, age 79, unknown 12.8
2645 Female, age 72, unknown 10.8
1956 Male, age 74, unknown 9.6
2292 Female, age 85, both hemispheres 6.2
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 8.7
1856 Female, age 91, right hemisphere 26.4
2824 Male, age 61, right hemisphere 13.8
1783 Male, age 74, unknown 9.9
1806 Female, age 85, left hemisphere 7.6
2698 Female, age 72, unknown 7.0
2286 Male, age 75, left hemisphere 3.0
2732 Male, age 80, right hemisphere 2.0
2391 Female, age 94, left hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.7
2393 Male, age 80, right hemisphere 2.0
2821 Male, age 75, both hemispheres 1.0
2484 Female, age 94, left hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 15.7
2029 Male, age 61, right hemisphere 20.8
1812 Female, age 91, both hemispheres 20.2
2775 Male, age 80, right hemisphere 17.9
2195 Female, age 85, both hemispheres 15.7
1979 Male, age 74, unknown 3.8
Olfactory tubercle
nTPM: 16.4
1998 Female, age 91, both hemispheres 19.9
1846 Male, age 80, right hemisphere 16.9
2487 Female, age 94, left hemisphere 14.9
2856 Male, age 75, right hemisphere 13.7
Putamen
nTPM: 4.9
1937 Female, age 91, right hemisphere 17.0
1838 Male, age 80, right hemisphere 12.2
2466 Female, age 79, unknown 3.3
1829 Male, age 74, unknown 2.1
2482 Female, age 94, left hemisphere 0.0
2489 Female, age 72, unknown 0.0
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 11.0
2031 Female, age 72, unknown 20.3
2009 Female, age 91, both hemispheres 16.8
1960 Male, age 74, unknown 16.6
2629 Female, age 94, right hemisphere 15.3
2059 Female, age 85, both hemispheres 5.9
2394 Male, age 61, left hemisphere 2.0
2199 Male, age 80, right hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 29.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 15.7
Samples: 246

Max nTPM: 70.6
Min nTPM: 2.0
Std nTPM: 10.8
Median nTPM: 13.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 70.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 60.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 46.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 45.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 42.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 41.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 41.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 40.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 38.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 38.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 37.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 29.4
Samples: 246

Max nTPM: 69.2
Min nTPM: 1.1
Std nTPM: 14.8
Median nTPM: 30.6
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 69.2
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 65.1
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 65.0
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 62.2
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 59.9
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 55.0
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 54.9
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 54.2
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 53.0
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 52.7
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 51.9
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Brain - Putamen (basal ganglia)
Average nTPM: 14.0
Samples: 205

Max nTPM: 51.5
Min nTPM: 1.4
Std nTPM: 10.4
Median nTPM: 11.1
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 51.5
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 46.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 45.2
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 42.9
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 41.5
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 41.3
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 40.7
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 39.6
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 39.2
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 38.4
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 35.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 151.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 148.4
FF:10164-103B2 76 years, female 148.4
Globus pallidus
Scaled Tags Per Million: 22.2
FF:10175-103C4 60 years, female 33.1
FF:10161-103A8 76 years, female 11.3
Nucleus accumbens
Scaled Tags Per Million: 141.0
FF:10037-101F1 23-56 years, mixed 141.0
Putamen
Scaled Tags Per Million: 151.9
FF:10176-103C5 60 years, female 151.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 20.6
Pig sample Sample description nTPM
Caudate
nTPM: 5.3
Samples: 4

Max nTPM: 9.8
Min nTPM: 2.6
Sample A Female 9.8
Sample B Female 4.6
Sample C Male 4.3
Sample D Male 2.6
Putamen
nTPM: 6.9
Samples: 4

Max nTPM: 14.7
Min nTPM: 3.4
Sample A Female 14.7
Sample B Female 4.5
Sample C Male 5.0
Sample D Male 3.4
Septum
nTPM: 20.6
Samples: 4

Max nTPM: 34.7
Min nTPM: 6.3
Sample A Female 17.9
Sample B Female 23.4
Sample C Male 34.7
Sample D Male 6.3
Ventral pallidum
nTPM: 20.3
Samples: 4

Max nTPM: 38.5
Min nTPM: 7.2
Sample A Female 7.4
Sample B Female 27.9
Sample C Male 38.5
Sample D Male 7.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 52.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 33.3
Samples: 4

Max nTPM: 37.3
Min nTPM: 30.0
Sample A Male 30.0
Sample B Male 31.5
Sample C Female 37.3
Sample D Female 34.3
Septum
nTPM: 35.9
Samples: 4

Max nTPM: 51.9
Min nTPM: 22.6
Sample A Male 51.9
Sample B Male 22.6
Sample C Female 37.7
Sample D Female 31.5
Ventral forebrain
nTPM: 52.3
Samples: 4

Max nTPM: 58.4
Min nTPM: 44.8
Sample A Male 52.7
Sample B Male 58.4
Sample C Female 44.8
Sample D Female 53.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.7
71924387 Antisense, RP_050623_03_E01, Mouse strain C57BL/6J (56 days, male) 0.7
70546039 Antisense, RP_050623_03_E01, Mouse strain C57BL/6J (56 days, male) 0.6
Pallidum
Expression energy: 2.1
71924387 Antisense, RP_050623_03_E01, Mouse strain C57BL/6J (56 days, male) 2.1
70546039 Antisense, RP_050623_03_E01, Mouse strain C57BL/6J (56 days, male) 1.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.