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BACE1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:67.0 nTPM
HPA:67.0 nTPM
GTEx:59.6 nTPM
FANTOM5:208.5 Scaled Tags Per Million
Pig:29.5 nTPM
Mouse:19.7 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 67.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.5
2019 Male, age 18, unknown 64.5
2411 Female, age 72, unknown 63.5
1830 Male, age 51, unknown 60.9
1870 Female, age 42, unknown 59.5
1833 Male, age 53, unknown 58.5
2586 Male, age 75, left hemisphere 55.8
2828 Female, age 72, unknown 46.2
2666 Male, age 74, left hemisphere 41.6
1827 Male, age 72, unknown 37.8
2219 Male, age 76, both hemispheres 36.4
Dorsal raphe nucleus
nTPM: 36.4
2750 Male, age 76, both hemispheres 60.9
1828 Male, age 53, unknown 38.3
2047 Male, age 72, unknown 30.2
2016 Female, age 72, unknown 30.1
2298 Female, age 72, unknown 22.4
Inferior colliculus
nTPM: 33.4
1890 Male, age 53, unknown 38.4
1848 Female, age 42, unknown 35.5
2849 Male, age 72, unknown 30.6
2097 Female, age 72, unknown 29.2
Median raphe nucleus
nTPM: 38.1
2220 Male, age 76, midline 38.1
Pedunculopontine tegmental nucleus
nTPM: 42.2
2334 Male, age 80, both hemispheres 46.4
2338 Male, age 61, both hemispheres 42.8
1921 Female, age 85, both hemispheres 37.5
Periaquaductal grey, anterior
nTPM: 31.7
2502 Female, age 75, unknown 36.9
1947 Male, age 18, unknown 32.5
1795 Male, age 51, unknown 25.8
Periaquaductal grey, dorsal
nTPM: 25.5
2464 Female, age 72, unknown 35.8
1831 Male, age 72, unknown 30.8
1840 Male, age 53, unknown 18.1
2850 Male, age 76, both hemispheres 17.5
Periaquaductal grey, lateral
nTPM: 27.9
2053 Male, age 18, unknown 32.7
2272 Male, age 74, both hemispheres 32.7
2140 Male, age 76, both hemispheres 18.3
Pretectal area
nTPM: 35.9
1815 Male, age 53, unknown 47.9
2407 Male, age 75, both hemispheres 45.1
1817 Female, age 42, unknown 42.2
2007 Male, age 72, unknown 41.4
2667 Female, age 75, unknown 35.5
1944 Female, age 72, unknown 33.2
2316 Male, age 76, right hemisphere 31.9
1816 Male, age 51, unknown 31.6
2825 Male, age 18, unknown 31.6
2273 Male, age 74, both hemispheres 29.6
2224 Female, age 72, unknown 25.3
Red nucleus
nTPM: 67.0
1865 Male, age 51, unknown 83.2
1904 Male, age 53, unknown 77.1
1821 Female, age 72, unknown 72.4
2588 Male, age 74, left hemisphere 70.3
2769 Male, age 72, unknown 69.6
2584 Male, age 75, left hemisphere 68.0
2785 Male, age 18, unknown 66.0
2227 Male, age 72, unknown 65.2
2503 Female, age 72, unknown 64.6
2823 Male, age 76, right hemisphere 62.3
1954 Female, age 42, unknown 59.5
2725 Female, age 75, unknown 46.0
Substantia nigra
nTPM: 42.7
2583 Male, age 75, right hemisphere 69.1
2590 Female, age 75, unknown 51.1
1851 Male, age 51, unknown 47.6
1889 Female, age 72, unknown 46.0
2409 Female, age 72, unknown 41.0
1941 Male, age 53, unknown 36.1
1916 Female, age 42, unknown 35.9
2699 Male, age 18, unknown 35.2
2241 Male, age 72, unknown 35.1
2665 Male, age 74, both hemispheres 30.4
Superior colliculus
nTPM: 42.4
1913 Female, age 42, unknown 59.9
1995 Male, age 72, unknown 56.1
2587 Male, age 74, left hemisphere 45.6
2668 Female, age 75, unknown 42.5
1839 Male, age 51, unknown 40.1
1895 Male, age 76, right hemisphere 38.1
2664 Male, age 75, both hemispheres 38.0
2261 Male, age 18, unknown 35.6
1796 Male, age 53, unknown 34.6
2087 Female, age 72, unknown 33.9
Ventral tegmental area
nTPM: 48.9
2223 Female, age 72, unknown 77.4
2410 Female, age 72, unknown 60.3
2218 Male, age 76, both hemispheres 42.7
1942 Male, age 51, unknown 38.2
1915 Female, age 42, unknown 37.4
2021 Male, age 53, unknown 37.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 59.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 59.6
Samples: 139

Max nTPM: 174.4
Min nTPM: 24.3
Std nTPM: 28.4
Median nTPM: 50.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 174.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 166.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 156.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 154.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 149.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 148.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 126.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 125.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 103.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 101.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 96.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 208.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 208.5
FF:10158-103A5 76 years, female 208.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.5
Pig sample Sample description nTPM
Midbrain
nTPM: 29.5
Samples: 4

Max nTPM: 38.9
Min nTPM: 20.3
Sample A Female 34.0
Sample B Female 20.3
Sample C Male 38.9
Sample D Male 24.8
Periaqueductal gray
nTPM: 20.3
Samples: 3

Max nTPM: 21.3
Min nTPM: 19.7
Sample B Female 19.8
Sample C Male 21.3
Sample D Male 19.7
Substantia nigra
nTPM: 24.7
Samples: 4

Max nTPM: 29.1
Min nTPM: 19.2
Sample A Female 28.2
Sample B Female 19.2
Sample C Male 29.1
Sample D Male 22.2
Superior colliculi
nTPM: 26.5
Samples: 4

Max nTPM: 33.9
Min nTPM: 19.0
Sample A Female 25.2
Sample B Female 19.0
Sample C Male 33.9
Sample D Male 27.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 19.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.7
Samples: 4

Max nTPM: 21.6
Min nTPM: 17.8
Sample A Male 18.1
Sample B Male 17.8
Sample C Female 21.6
Sample D Female 21.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
69528046 Antisense, RP_050421_03_A04, Mouse strain C57BL/6J (56 days, male) 0.9
73520965 Antisense, RP_051017_04_E05, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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