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NAP1L2
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.4 nTPM
HPA:24.4 nTPM
GTEx:31.8 nTPM
FANTOM5:120.4 Scaled Tags Per Million
Pig:19.8 nTPM
Mouse:89.3 nTPM
Allen mouse:11.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 24.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 11.0
1781 Male, age 74, unknown 14.9
2288 Male, age 75, left hemisphere 13.7
2846 Female, age 79, unknown 12.6
1857 Female, age 85, left hemisphere 12.4
2481 Female, age 94, left hemisphere 11.1
2290 Female, age 72, unknown 8.9
1854 Male, age 80, left hemisphere 7.8
2289 Male, age 61, right hemisphere 6.6
Claustrum
nTPM: 15.4
2392 Female, age 94, both hemispheres 20.9
2284 Female, age 91, both hemispheres 19.6
2198 Male, age 80, both hemispheres 17.4
2491 Male, age 75, both hemispheres 17.3
1956 Male, age 74, unknown 16.1
2645 Female, age 72, unknown 15.1
2568 Male, age 61, both hemispheres 13.4
2196 Female, age 79, unknown 10.6
2292 Female, age 85, both hemispheres 8.0
Globus pallidus, externus
nTPM: 2.7
2772 Female, age 79, unknown 7.2
2395 Male, age 75, both hemispheres 5.9
2646 Male, age 61, right hemisphere 0.5
1996 Male, age 80, right hemisphere 0.0
2567 Female, age 72, unknown 0.0
Globus pallidus, internus
nTPM: 3.1
2483 Female, age 94, right hemisphere 7.4
2287 Male, age 75, right hemisphere 6.1
1818 Male, age 74, unknown 5.3
2566 Female, age 72, unknown 1.3
2778 Female, age 91, both hemispheres 1.3
2037 Male, age 80, right hemisphere 0.5
2111 Female, age 85, right hemisphere 0.0
Nucleus accumbens
nTPM: 12.0
1856 Female, age 91, right hemisphere 19.6
2824 Male, age 61, right hemisphere 18.5
2286 Male, age 75, left hemisphere 12.8
1783 Male, age 74, unknown 11.9
1806 Female, age 85, left hemisphere 10.5
2698 Female, age 72, unknown 9.7
2391 Female, age 94, left hemisphere 9.3
2732 Male, age 80, right hemisphere 3.5
Nucleus basalis of Meynert
nTPM: 7.1
2484 Female, age 94, left hemisphere 10.5
2821 Male, age 75, both hemispheres 10.0
2393 Male, age 80, right hemisphere 8.1
2569 Male, age 61, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 21.8
1812 Female, age 91, both hemispheres 32.1
2775 Male, age 80, right hemisphere 23.3
2029 Male, age 61, right hemisphere 22.4
2195 Female, age 85, both hemispheres 20.0
1979 Male, age 74, unknown 11.0
Olfactory tubercle
nTPM: 24.4
1998 Female, age 91, both hemispheres 31.6
2487 Female, age 94, left hemisphere 23.2
2856 Male, age 75, right hemisphere 21.6
1846 Male, age 80, right hemisphere 21.1
Putamen
nTPM: 9.3
1937 Female, age 91, right hemisphere 13.5
1838 Male, age 80, right hemisphere 12.7
2466 Female, age 79, unknown 11.3
1829 Male, age 74, unknown 9.6
2482 Female, age 94, left hemisphere 9.4
2647 Male, age 75, left hemisphere 6.0
2489 Female, age 72, unknown 2.9
Septal nuclei
nTPM: 16.6
2031 Female, age 72, unknown 28.1
1960 Male, age 74, unknown 21.3
2009 Female, age 91, both hemispheres 21.3
2629 Female, age 94, right hemisphere 21.2
2059 Female, age 85, both hemispheres 10.3
2394 Male, age 61, left hemisphere 8.3
2199 Male, age 80, right hemisphere 5.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 31.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 27.6
Samples: 246

Max nTPM: 114.1
Min nTPM: 5.0
Std nTPM: 14.2
Median nTPM: 26.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 114.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 79.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 67.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 61.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 61.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 60.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 53.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 53.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 51.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 50.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 50.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 31.8
Samples: 246

Max nTPM: 79.0
Min nTPM: 6.7
Std nTPM: 13.2
Median nTPM: 32.9
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 79.0
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 64.3
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 60.6
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 60.2
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 58.5
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 57.2
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 56.1
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 53.8
GTEX-145LS-0011-R6b-SM-5PNWL 60-69 years, female 52.7
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 52.5
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 52.5
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Brain - Putamen (basal ganglia)
Average nTPM: 24.7
Samples: 205

Max nTPM: 59.8
Min nTPM: 4.2
Std nTPM: 12.2
Median nTPM: 23.5
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 59.8
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 57.7
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 56.0
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 54.5
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 52.3
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 51.6
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 50.3
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 49.2
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 48.3
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 46.3
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 45.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 120.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 83.5
FF:10164-103B2 76 years, female 83.5
Globus pallidus
Scaled Tags Per Million: 40.0
FF:10175-103C4 60 years, female 59.2
FF:10161-103A8 76 years, female 20.9
Nucleus accumbens
Scaled Tags Per Million: 108.5
FF:10037-101F1 23-56 years, mixed 108.5
Putamen
Scaled Tags Per Million: 120.4
FF:10176-103C5 60 years, female 120.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 19.8
Pig sample Sample description nTPM
Caudate
nTPM: 14.5
Samples: 4

Max nTPM: 18.0
Min nTPM: 12.3
Sample A Female 12.8
Sample B Female 12.3
Sample C Male 18.0
Sample D Male 14.9
Putamen
nTPM: 19.8
Samples: 4

Max nTPM: 34.6
Min nTPM: 9.5
Sample A Female 9.5
Sample B Female 16.8
Sample C Male 34.6
Sample D Male 18.3
Septum
nTPM: 11.3
Samples: 4

Max nTPM: 14.4
Min nTPM: 8.7
Sample A Female 11.5
Sample B Female 10.4
Sample C Male 14.4
Sample D Male 8.7
Ventral pallidum
nTPM: 12.8
Samples: 4

Max nTPM: 16.0
Min nTPM: 10.0
Sample A Female 12.8
Sample B Female 12.2
Sample C Male 16.0
Sample D Male 10.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 89.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 78.7
Samples: 4

Max nTPM: 83.6
Min nTPM: 75.1
Sample A Male 83.6
Sample B Male 75.1
Sample C Female 79.2
Sample D Female 76.9
Septum
nTPM: 89.3
Samples: 4

Max nTPM: 93.9
Min nTPM: 82.2
Sample A Male 92.1
Sample B Male 89.0
Sample C Female 93.9
Sample D Female 82.2
Ventral forebrain
nTPM: 87.1
Samples: 4

Max nTPM: 95.0
Min nTPM: 81.8
Sample A Male 86.3
Sample B Male 95.0
Sample C Female 81.8
Sample D Female 85.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 11.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 8.4
71234531 Antisense, RP_050505_02_C01, Mouse strain C57BL/6J (56 days, male) 8.4
Pallidum
Expression energy: 11.5
71234531 Antisense, RP_050505_02_C01, Mouse strain C57BL/6J (56 days, male) 11.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.