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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Mouse brain, Intensity
Hippocampal formationi 		126.371
RNA expressioni
Consensus:54.1 nTPM
HPA:54.1 nTPM
GTEx:45.4 nTPM
FANTOM5:190.5 Scaled Tags Per Million
Pig:147.3 nTPM
Mouse:183.4 nTPM
Allen mouse:2.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003534Antibody CAB018380
Glial cells LowMedium
Neuronal cells LowMedium





HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA003534
Hippocampal formation mean intensity 126.371
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 126.371
Molecular layer of the dentate gyrus 87.171
Granular dentate gyrus 28.739
CA1 - oriens layer 91.093
CA1 - pyramidal layer 19.396
CA1 - radiatum layer 86.442
CA2 - oriens layer 76.454
CA2 - pyramidal layer 29.616
CA2 - radiatum layer 92.662
CA3 - oriens layer 49.997
CA3 - pyramidal layer 17.123
CA3 - radiatum layer 71.312
Stratum lucidum 64.622
Lacunosum moleculare 33.285
Subiculum 83.134

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 54.1
Sample id Sample description nTPM
Hippocampus
nTPM: 28.0
1855 Male, age 76, left hemisphere 50.5
1898 Male, age 80, left hemisphere 38.5
2621 Female, age 67, right hemisphere 26.0
2148 Female, age 91, left hemisphere 24.8
1911 Female, age 85, right hemisphere 20.0
2529 Female, age 94, left hemisphere 8.0
Dentate gyrus
nTPM: 34.8
2010 Male, age 76, both hemispheres 50.9
1927 Female, age 91, both hemispheres 50.7
2246 Female, age 85, both hemispheres 45.7
2531 Female, age 67, both hemispheres 35.0
2528 Male, age 74, both hemispheres 15.5
2530 Female, age 94, left hemisphere 11.2
Entorhinal gyrus
nTPM: 26.6
1938 Female, age 85, left hemisphere 38.8
2613 Female, age 94, left hemisphere 36.1
1787 Male, age 76, left hemisphere 31.2
2764 Male, age 80, right hemisphere 28.2
2686 Male, age 75, right hemisphere 14.2
2117 Female, age 91, right hemisphere 10.8
Hippocampus, CA1
nTPM: 43.0
2045 Male, age 76, both hemispheres 72.0
2749 Male, age 80, left hemisphere 45.3
2082 Female, age 91, right hemisphere 41.9
1873 Female, age 85, both hemispheres 41.4
2527 Male, age 74, both hemispheres 14.5
Hippocampus, CA2
nTPM: 24.5
1892 Male, age 76, both hemispheres 45.1
1963 Male, age 80, left hemisphere 29.7
1940 Female, age 85, left hemisphere 24.0
2113 Female, age 91, right hemisphere 22.5
2437 Female, age 94, left hemisphere 14.3
2249 Male, age 74, both hemispheres 11.5
Hippocampus, CA3
nTPM: 27.5
2137 Male, age 80, left hemisphere 36.7
1867 Male, age 76, both hemispheres 34.4
2620 Female, age 94, left hemisphere 30.0
2861 Female, age 67, both hemispheres 22.7
1891 Female, age 85, both hemispheres 20.9
2436 Male, age 74, both hemispheres 20.2
Parahippocampal cortex
nTPM: 29.7
1933 Female, age 85, both hemispheres 45.0
1850 Male, age 80, both hemispheres 38.3
2250 Female, age 67, right hemisphere 38.2
2693 Female, age 94, both hemispheres 33.6
2018 Male, age 76, both hemispheres 32.6
2245 Female, age 91, both hemispheres 32.2
1990 Female, age 91, right hemisphere 28.4
2532 Female, age 72, left hemisphere 22.0
2622 Female, age 67, right hemisphere 17.7
2692 Male, age 74, both hemispheres 8.8
Perirhinal gyrus
nTPM: 54.1
1847 Female, age 91, left hemisphere 79.3
2521 Female, age 94, right hemisphere 65.5
1841 Female, age 85, right hemisphere 43.6
1794 Male, age 80, right hemisphere 41.4
2848 Male, age 76, right hemisphere 40.6
Subiculum
nTPM: 18.8
1977 Female, age 85, both hemispheres 40.9
2729 Female, age 91, right hemisphere 18.3
2042 Male, age 76, both hemispheres 17.5
1901 Male, age 80, both hemispheres 16.0
2619 Male, age 74, both hemispheres 11.0
2438 Female, age 94, left hemisphere 8.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 45.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 45.4
Samples: 197

Max nTPM: 148.7
Min nTPM: 4.9
Std nTPM: 27.6
Median nTPM: 41.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 148.7
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 130.0
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 122.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 106.0
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 105.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 104.1
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 101.9
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 99.5
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 98.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 96.2
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 93.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 190.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 190.5
FF:10169-103B7 60 years, female 289.8
FF:10153-102I9 76 years, female 91.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 147.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 134.3
Samples: 4

Max nTPM: 160.8
Min nTPM: 106.6
Sample A Female 160.8
Sample B Female 146.6
Sample C Male 106.6
Sample D Male 123.0
Entorhinal cortex
nTPM: 103.2
Samples: 4

Max nTPM: 117.9
Min nTPM: 89.0
Sample A Female 108.9
Sample B Female 96.9
Sample C Male 117.9
Sample D Male 89.0
Subiculum
nTPM: 122.6
Samples: 4

Max nTPM: 156.9
Min nTPM: 95.9
Sample A Female 156.9
Sample B Female 112.9
Sample C Male 124.6
Sample D Male 95.9
Ventral hippocampus
nTPM: 147.3
Samples: 4

Max nTPM: 179.9
Min nTPM: 111.1
Sample A Female 179.9
Sample B Female 111.1
Sample C Male 163.2
Sample D Male 135.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 183.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 150.5
Samples: 4

Max nTPM: 167.2
Min nTPM: 135.5
Sample A Male 135.5
Sample B Male 146.5
Sample C Female 152.9
Sample D Female 167.2
Hippocampal formation
nTPM: 183.4
Samples: 4

Max nTPM: 199.0
Min nTPM: 171.5
Sample A Male 173.2
Sample B Male 189.8
Sample C Female 199.0
Sample D Female 171.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.1
67936006 Antisense, RP_040604_01_F06, Mouse strain C57BL/6J (56 days, male) 3.6
76098396 Antisense, RP_060626_01_G09, Mouse strain C57BL/6J (56 days, male) 2.1
77414160 Antisense, RP_070205_01_F05, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.