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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.4 nTPM
HPA:5.4 nTPM
GTEx:5.4 nTPM
FANTOM5:35.8 Scaled Tags Per Million
Pig:0.5 nTPM
Mouse:0.9 nTPM
Allen mouse:0.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA049402
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 4.9
1857 Female, age 85, left hemisphere 6.0
1854 Male, age 80, left hemisphere 5.9
2290 Female, age 72, unknown 5.3
2289 Male, age 61, right hemisphere 5.1
1781 Male, age 74, unknown 4.9
2288 Male, age 75, left hemisphere 4.2
2481 Female, age 94, left hemisphere 3.8
2846 Female, age 79, unknown 3.6
Claustrum
nTPM: 5.4
2568 Male, age 61, both hemispheres 7.0
2491 Male, age 75, both hemispheres 5.5
2645 Female, age 72, unknown 5.5
2284 Female, age 91, both hemispheres 5.4
2196 Female, age 79, unknown 5.2
1956 Male, age 74, unknown 5.1
2198 Male, age 80, both hemispheres 5.1
2392 Female, age 94, both hemispheres 5.1
2292 Female, age 85, both hemispheres 4.7
Globus pallidus, externus
nTPM: 3.5
2772 Female, age 79, unknown 4.2
2646 Male, age 61, right hemisphere 3.6
2395 Male, age 75, both hemispheres 3.4
2567 Female, age 72, unknown 3.3
1996 Male, age 80, right hemisphere 2.9
Globus pallidus, internus
nTPM: 3.3
1818 Male, age 74, unknown 4.3
2483 Female, age 94, right hemisphere 3.3
2566 Female, age 72, unknown 3.3
2778 Female, age 91, both hemispheres 3.2
2037 Male, age 80, right hemisphere 3.1
2287 Male, age 75, right hemisphere 3.1
2111 Female, age 85, right hemisphere 3.0
Nucleus accumbens
nTPM: 4.5
1806 Female, age 85, left hemisphere 6.1
2824 Male, age 61, right hemisphere 5.9
1856 Female, age 91, right hemisphere 5.6
1783 Male, age 74, unknown 4.8
2286 Male, age 75, left hemisphere 4.3
2391 Female, age 94, left hemisphere 3.2
2698 Female, age 72, unknown 3.2
2732 Male, age 80, right hemisphere 2.9
Nucleus basalis of Meynert
nTPM: 4.1
2393 Male, age 80, right hemisphere 4.5
2484 Female, age 94, left hemisphere 4.3
2821 Male, age 75, both hemispheres 4.1
2569 Male, age 61, both hemispheres 3.6
Nucleus of the diagonal band
nTPM: 5.1
2029 Male, age 61, right hemisphere 7.4
2775 Male, age 80, right hemisphere 5.2
2195 Female, age 85, both hemispheres 5.0
1812 Female, age 91, both hemispheres 4.2
1979 Male, age 74, unknown 3.7
Olfactory tubercle
nTPM: 5.4
2487 Female, age 94, left hemisphere 5.7
2856 Male, age 75, right hemisphere 5.5
1998 Female, age 91, both hemispheres 5.3
1846 Male, age 80, right hemisphere 4.9
Putamen
nTPM: 5.1
1937 Female, age 91, right hemisphere 7.2
1838 Male, age 80, right hemisphere 5.6
2647 Male, age 75, left hemisphere 5.2
2489 Female, age 72, unknown 4.9
2466 Female, age 79, unknown 4.6
1829 Male, age 74, unknown 4.3
2482 Female, age 94, left hemisphere 4.1
Septal nuclei
nTPM: 4.7
2629 Female, age 94, right hemisphere 5.6
1960 Male, age 74, unknown 5.5
2031 Female, age 72, unknown 4.9
2009 Female, age 91, both hemispheres 4.7
2394 Male, age 61, left hemisphere 4.5
2059 Female, age 85, both hemispheres 4.1
2199 Male, age 80, right hemisphere 3.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 5.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 5.4
Samples: 246

Max nTPM: 17.8
Min nTPM: 0.6
Std nTPM: 2.8
Median nTPM: 4.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 17.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 15.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 15.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 14.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 14.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 13.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 12.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 12.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 12.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 11.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 11.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 4.0
Samples: 246

Max nTPM: 13.7
Min nTPM: 0.6
Std nTPM: 2.5
Median nTPM: 3.4
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 13.7
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 13.1
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 13.0
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 12.4
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 12.4
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 12.0
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 12.0
GTEX-13X6K-0011-R6a-SM-5P9K6 60-69 years, female 10.7
GTEX-14LZ3-0011-R6a-SM-D3L8C 60-69 years, female 10.5
GTEX-1GF9W-0011-R6b-SM-9QEIE 60-69 years, male 10.2
GTEX-RU72-0011-R6A-SM-2TF71 50-59 years, female 10.0
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Brain - Putamen (basal ganglia)
Average nTPM: 4.6
Samples: 205

Max nTPM: 14.2
Min nTPM: 1.2
Std nTPM: 2.3
Median nTPM: 4.1
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 14.2
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 13.6
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 12.6
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 11.9
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 11.6
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 10.2
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 9.9
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 9.8
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 9.7
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 9.2
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 9.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 20.3
FF:10164-103B2 76 years, female 20.3
Globus pallidus
Scaled Tags Per Million: 22.8
FF:10175-103C4 60 years, female 31.5
FF:10161-103A8 76 years, female 14.0
Nucleus accumbens
Scaled Tags Per Million: 32.8
FF:10037-101F1 23-56 years, mixed 32.8
Putamen
Scaled Tags Per Million: 35.8
FF:10176-103C5 60 years, female 35.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.5
Pig sample Sample description nTPM
Caudate
nTPM: 0.5
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.3
Sample A Female 0.5
Sample B Female 0.5
Sample C Male 0.3
Sample D Male 0.6
Putamen
nTPM: 0.3
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.3
Sample A Female 0.3
Sample B Female 0.3
Sample C Male 0.3
Sample D Male 0.4
Septum
nTPM: 0.5
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.4
Sample A Female 0.6
Sample B Female 0.4
Sample C Male 0.6
Sample D Male 0.4
Ventral pallidum
nTPM: 0.4
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.4
Sample A Female 0.5
Sample B Female 0.4
Sample C Male 0.4
Sample D Male 0.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.5
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.1
Sample A Male 0.6
Sample B Male 0.1
Sample C Female 0.5
Sample D Female 0.6
Septum
nTPM: 0.9
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.5
Sample A Male 1.1
Sample B Male 0.5
Sample C Female 1.1
Sample D Female 1.0
Ventral forebrain
nTPM: 0.6
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.4
Sample A Male 0.4
Sample B Male 0.7
Sample C Female 0.5
Sample D Female 0.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
68341651 Antisense, RP_041207_01_H11, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.2
68341651 Antisense, RP_041207_01_H11, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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