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ZNF397
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.9 nTPM
HPA:20.9 nTPM
GTEx:13.4 nTPM
FANTOM5:74.3 Scaled Tags Per Million
Pig:4.9 nTPM
Mouse:13.2 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.2
1830 Male, age 51, unknown 21.3
2411 Female, age 72, unknown 20.4
1833 Male, age 53, unknown 19.1
2019 Male, age 18, unknown 18.5
1870 Female, age 42, unknown 17.3
2219 Male, age 76, both hemispheres 16.7
2828 Female, age 72, unknown 16.5
1827 Male, age 72, unknown 16.0
2666 Male, age 74, left hemisphere 14.9
2586 Male, age 75, left hemisphere 11.7
Dorsal raphe nucleus
nTPM: 12.8
2750 Male, age 76, both hemispheres 16.5
2016 Female, age 72, unknown 14.6
1828 Male, age 53, unknown 13.3
2047 Male, age 72, unknown 10.0
2298 Female, age 72, unknown 9.3
Inferior colliculus
nTPM: 14.5
2849 Male, age 72, unknown 15.9
1848 Female, age 42, unknown 14.9
1890 Male, age 53, unknown 14.5
2097 Female, age 72, unknown 12.7
Median raphe nucleus
nTPM: 14.5
2220 Male, age 76, midline 14.5
Pedunculopontine tegmental nucleus
nTPM: 16.5
2334 Male, age 80, both hemispheres 17.5
2338 Male, age 61, both hemispheres 16.4
1921 Female, age 85, both hemispheres 15.8
Periaquaductal grey, anterior
nTPM: 14.4
2502 Female, age 75, unknown 17.0
1947 Male, age 18, unknown 14.6
1795 Male, age 51, unknown 11.5
Periaquaductal grey, dorsal
nTPM: 13.6
2464 Female, age 72, unknown 17.4
2850 Male, age 76, both hemispheres 13.5
1831 Male, age 72, unknown 12.5
1840 Male, age 53, unknown 10.9
Periaquaductal grey, lateral
nTPM: 14.1
2140 Male, age 76, both hemispheres 15.0
2053 Male, age 18, unknown 13.9
2272 Male, age 74, both hemispheres 13.4
Pretectal area
nTPM: 15.1
2407 Male, age 75, both hemispheres 19.3
2316 Male, age 76, right hemisphere 19.1
1815 Male, age 53, unknown 17.6
2825 Male, age 18, unknown 15.2
1817 Female, age 42, unknown 14.9
2007 Male, age 72, unknown 14.8
2273 Male, age 74, both hemispheres 13.8
2667 Female, age 75, unknown 13.7
1944 Female, age 72, unknown 12.7
1816 Male, age 51, unknown 12.5
2224 Female, age 72, unknown 12.3
Red nucleus
nTPM: 20.9
1865 Male, age 51, unknown 24.9
2503 Female, age 72, unknown 23.9
1904 Male, age 53, unknown 22.3
2785 Male, age 18, unknown 21.9
2823 Male, age 76, right hemisphere 21.3
2725 Female, age 75, unknown 21.2
2588 Male, age 74, left hemisphere 20.0
2769 Male, age 72, unknown 19.7
2227 Male, age 72, unknown 19.6
1954 Female, age 42, unknown 19.4
1821 Female, age 72, unknown 18.6
2584 Male, age 75, left hemisphere 17.5
Substantia nigra
nTPM: 14.7
2409 Female, age 72, unknown 21.3
2583 Male, age 75, right hemisphere 16.7
2241 Male, age 72, unknown 15.3
2699 Male, age 18, unknown 15.3
2590 Female, age 75, unknown 14.7
1889 Female, age 72, unknown 14.3
1941 Male, age 53, unknown 14.0
1851 Male, age 51, unknown 13.5
2665 Male, age 74, both hemispheres 12.0
1916 Female, age 42, unknown 10.0
Superior colliculus
nTPM: 16.1
1913 Female, age 42, unknown 22.2
1995 Male, age 72, unknown 21.6
1895 Male, age 76, right hemisphere 18.9
1839 Male, age 51, unknown 17.6
2587 Male, age 74, left hemisphere 15.8
2668 Female, age 75, unknown 14.0
1796 Male, age 53, unknown 13.7
2087 Female, age 72, unknown 13.2
2261 Male, age 18, unknown 12.7
2664 Male, age 75, both hemispheres 11.5
Ventral tegmental area
nTPM: 14.7
2410 Female, age 72, unknown 18.0
2223 Female, age 72, unknown 15.7
2218 Male, age 76, both hemispheres 14.7
2021 Male, age 53, unknown 14.1
1942 Male, age 51, unknown 13.1
1915 Female, age 42, unknown 12.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.4
Samples: 139

Max nTPM: 24.9
Min nTPM: 5.9
Std nTPM: 3.7
Median nTPM: 12.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 24.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 24.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 24.8
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 23.1
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 21.7
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 21.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 20.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 20.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 20.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 19.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 19.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 74.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 74.3
FF:10158-103A5 76 years, female 74.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 4.9
Pig sample Sample description nTPM
Midbrain
nTPM: 4.9
Samples: 4

Max nTPM: 5.2
Min nTPM: 4.6
Sample A Female 5.2
Sample B Female 4.8
Sample C Male 4.6
Sample D Male 5.0
Periaqueductal gray
nTPM: 4.6
Samples: 3

Max nTPM: 5.0
Min nTPM: 3.9
Sample B Female 5.0
Sample C Male 3.9
Sample D Male 4.9
Substantia nigra
nTPM: 4.4
Samples: 4

Max nTPM: 6.0
Min nTPM: 3.4
Sample A Female 3.4
Sample B Female 4.1
Sample C Male 3.9
Sample D Male 6.0
Superior colliculi
nTPM: 4.3
Samples: 4

Max nTPM: 4.6
Min nTPM: 3.8
Sample A Female 4.2
Sample B Female 4.6
Sample C Male 3.8
Sample D Male 4.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.2
Samples: 4

Max nTPM: 14.3
Min nTPM: 11.8
Sample A Male 11.8
Sample B Male 14.3
Sample C Female 13.7
Sample D Female 13.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
68445913 Antisense, RP_050113_01_B09, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.