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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:14.8 nTPM
HPA:14.8 nTPM
GTEx:18.7 nTPM
FANTOM5:53.8 Scaled Tags Per Million
Pig:45.5 nTPM
Mouse:24.0 nTPM
Allen mouse:4.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA008926Antibody CAB011625
Glial cells HighMedium
Neuronal cells HighHigh




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 14.8
Sample id Sample description nTPM
Hippocampus
nTPM: 13.3
1898 Male, age 80, left hemisphere 15.3
1855 Male, age 76, left hemisphere 13.8
2621 Female, age 67, right hemisphere 13.7
2148 Female, age 91, left hemisphere 12.7
1911 Female, age 85, right hemisphere 12.3
2529 Female, age 94, left hemisphere 11.7
Dentate gyrus
nTPM: 13.0
2530 Female, age 94, left hemisphere 15.3
2010 Male, age 76, both hemispheres 13.2
2528 Male, age 74, both hemispheres 13.0
2246 Female, age 85, both hemispheres 12.7
1927 Female, age 91, both hemispheres 12.4
2531 Female, age 67, both hemispheres 11.5
Entorhinal gyrus
nTPM: 14.4
2613 Female, age 94, left hemisphere 16.0
1787 Male, age 76, left hemisphere 15.0
2764 Male, age 80, right hemisphere 14.9
1938 Female, age 85, left hemisphere 14.1
2686 Male, age 75, right hemisphere 13.9
2117 Female, age 91, right hemisphere 12.6
Hippocampus, CA1
nTPM: 13.6
2749 Male, age 80, left hemisphere 18.1
2527 Male, age 74, both hemispheres 14.0
2082 Female, age 91, right hemisphere 13.4
1873 Female, age 85, both hemispheres 13.0
2045 Male, age 76, both hemispheres 9.6
Hippocampus, CA2
nTPM: 13.8
1963 Male, age 80, left hemisphere 15.8
1940 Female, age 85, left hemisphere 14.1
1892 Male, age 76, both hemispheres 13.6
2249 Male, age 74, both hemispheres 13.3
2113 Female, age 91, right hemisphere 13.0
2437 Female, age 94, left hemisphere 12.7
Hippocampus, CA3
nTPM: 12.9
2137 Male, age 80, left hemisphere 15.6
2861 Female, age 67, both hemispheres 13.9
2436 Male, age 74, both hemispheres 13.1
1891 Female, age 85, both hemispheres 12.5
1867 Male, age 76, both hemispheres 11.6
2620 Female, age 94, left hemisphere 10.5
Parahippocampal cortex
nTPM: 13.7
1850 Male, age 80, both hemispheres 15.8
2532 Female, age 72, left hemisphere 14.6
2250 Female, age 67, right hemisphere 14.3
1990 Female, age 91, right hemisphere 14.1
2692 Male, age 74, both hemispheres 14.0
1933 Female, age 85, both hemispheres 13.5
2622 Female, age 67, right hemisphere 13.2
2245 Female, age 91, both hemispheres 13.0
2693 Female, age 94, both hemispheres 13.0
2018 Male, age 76, both hemispheres 11.7
Perirhinal gyrus
nTPM: 14.8
1794 Male, age 80, right hemisphere 16.1
1847 Female, age 91, left hemisphere 15.4
1841 Female, age 85, right hemisphere 14.5
2848 Male, age 76, right hemisphere 13.9
2521 Female, age 94, right hemisphere 13.8
Subiculum
nTPM: 13.0
2619 Male, age 74, both hemispheres 13.4
1901 Male, age 80, both hemispheres 13.3
2438 Female, age 94, left hemisphere 13.2
1977 Female, age 85, both hemispheres 13.0
2729 Female, age 91, right hemisphere 12.6
2042 Male, age 76, both hemispheres 12.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 18.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 18.7
Samples: 197

Max nTPM: 102.7
Min nTPM: 10.6
Std nTPM: 7.1
Median nTPM: 17.8
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 102.7
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 46.1
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 33.7
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 29.2
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 29.2
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 26.8
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 25.0
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 24.5
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 24.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 24.0
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 23.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 53.8
FF:10153-102I9 76 years, female 80.5
FF:10169-103B7 60 years, female 27.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 45.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 43.5
Samples: 4

Max nTPM: 49.7
Min nTPM: 34.5
Sample A Female 49.7
Sample B Female 41.2
Sample C Male 48.6
Sample D Male 34.5
Entorhinal cortex
nTPM: 42.7
Samples: 4

Max nTPM: 44.2
Min nTPM: 41.2
Sample A Female 42.8
Sample B Female 44.2
Sample C Male 41.2
Sample D Male 42.7
Subiculum
nTPM: 43.1
Samples: 4

Max nTPM: 52.3
Min nTPM: 39.1
Sample A Female 52.3
Sample B Female 40.9
Sample C Male 39.1
Sample D Male 40.0
Ventral hippocampus
nTPM: 45.5
Samples: 4

Max nTPM: 51.9
Min nTPM: 35.1
Sample A Female 46.3
Sample B Female 35.1
Sample C Male 51.9
Sample D Male 48.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 24.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 20.1
Samples: 4

Max nTPM: 21.1
Min nTPM: 19.4
Sample A Male 19.4
Sample B Male 21.1
Sample C Female 19.8
Sample D Female 20.0
Hippocampal formation
nTPM: 24.0
Samples: 4

Max nTPM: 26.0
Min nTPM: 20.5
Sample A Male 20.5
Sample B Male 24.4
Sample C Female 25.0
Sample D Female 26.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.1
71612179 Antisense, RP_050927_02_C04, Mouse strain C57BL/6J (56 days, male) 4.1
74273119 Antisense, RP_050927_02_C04, Mouse strain C57BL/6J (56 days, male) 3.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.