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FNBP1
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:73.7 nTPM
HPA:73.7 nTPM
GTEx:44.0 nTPM
FANTOM5:147.3 Scaled Tags Per Million
Pig:61.9 nTPM
Mouse:55.2 nTPM
Allen mouse:7.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA019635Antibody HPA019691Antibody HPA022119
Glial cells Not detectedLowLow
Neuronal cells Not detectedLowNot detected





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 73.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 38.0
2288 Male, age 75, left hemisphere 46.5
2481 Female, age 94, left hemisphere 41.4
1854 Male, age 80, left hemisphere 38.7
1781 Male, age 74, unknown 38.1
2289 Male, age 61, right hemisphere 37.3
2846 Female, age 79, unknown 36.6
2290 Female, age 72, unknown 35.6
1857 Female, age 85, left hemisphere 29.8
Claustrum
nTPM: 49.9
2292 Female, age 85, both hemispheres 70.5
1956 Male, age 74, unknown 61.3
2196 Female, age 79, unknown 49.0
2392 Female, age 94, both hemispheres 46.8
2568 Male, age 61, both hemispheres 45.4
2284 Female, age 91, both hemispheres 45.3
2645 Female, age 72, unknown 44.6
2491 Male, age 75, both hemispheres 44.2
2198 Male, age 80, both hemispheres 42.4
Globus pallidus, externus
nTPM: 72.1
2567 Female, age 72, unknown 88.9
2646 Male, age 61, right hemisphere 84.8
1996 Male, age 80, right hemisphere 71.9
2772 Female, age 79, unknown 58.9
2395 Male, age 75, both hemispheres 56.0
Globus pallidus, internus
nTPM: 73.7
2111 Female, age 85, right hemisphere 90.5
2566 Female, age 72, unknown 85.0
1818 Male, age 74, unknown 73.8
2778 Female, age 91, both hemispheres 71.9
2287 Male, age 75, right hemisphere 68.0
2037 Male, age 80, right hemisphere 67.4
2483 Female, age 94, right hemisphere 59.1
Nucleus accumbens
nTPM: 43.2
2391 Female, age 94, left hemisphere 55.2
2698 Female, age 72, unknown 53.6
2732 Male, age 80, right hemisphere 48.9
2286 Male, age 75, left hemisphere 41.8
1783 Male, age 74, unknown 38.3
1806 Female, age 85, left hemisphere 37.1
2824 Male, age 61, right hemisphere 37.1
1856 Female, age 91, right hemisphere 33.8
Nucleus basalis of Meynert
nTPM: 51.8
2569 Male, age 61, both hemispheres 81.4
2821 Male, age 75, both hemispheres 45.4
2393 Male, age 80, right hemisphere 41.5
2484 Female, age 94, left hemisphere 39.0
Nucleus of the diagonal band
nTPM: 30.7
1812 Female, age 91, both hemispheres 33.0
1979 Male, age 74, unknown 32.1
2029 Male, age 61, right hemisphere 31.0
2775 Male, age 80, right hemisphere 28.9
2195 Female, age 85, both hemispheres 28.7
Olfactory tubercle
nTPM: 34.8
2856 Male, age 75, right hemisphere 37.4
1846 Male, age 80, right hemisphere 36.0
2487 Female, age 94, left hemisphere 33.4
1998 Female, age 91, both hemispheres 32.3
Putamen
nTPM: 44.3
2647 Male, age 75, left hemisphere 54.5
2489 Female, age 72, unknown 54.3
1829 Male, age 74, unknown 51.3
2482 Female, age 94, left hemisphere 46.8
1937 Female, age 91, right hemisphere 38.5
2466 Female, age 79, unknown 33.0
1838 Male, age 80, right hemisphere 31.5
Septal nuclei
nTPM: 35.6
2394 Male, age 61, left hemisphere 48.5
2199 Male, age 80, right hemisphere 44.3
2629 Female, age 94, right hemisphere 37.5
2059 Female, age 85, both hemispheres 34.9
2009 Female, age 91, both hemispheres 32.3
2031 Female, age 72, unknown 26.3
1960 Male, age 74, unknown 25.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 44.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 36.1
Samples: 246

Max nTPM: 66.4
Min nTPM: 15.7
Std nTPM: 9.3
Median nTPM: 35.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 66.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 64.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 63.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 62.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 62.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 60.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 58.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 56.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 54.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 53.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 53.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 32.5
Samples: 246

Max nTPM: 92.1
Min nTPM: 16.1
Std nTPM: 10.3
Median nTPM: 29.8
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 92.1
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 74.8
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 73.3
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 63.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 61.0
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 59.4
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 59.3
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 57.7
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 54.8
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 54.2
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 52.9
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Brain - Putamen (basal ganglia)
Average nTPM: 44.0
Samples: 205

Max nTPM: 96.4
Min nTPM: 23.2
Std nTPM: 11.0
Median nTPM: 43.1
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 96.4
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 82.4
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 72.4
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 70.6
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 68.6
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 66.1
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 65.9
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 65.6
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 65.4
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 64.3
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 63.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 147.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 59.4
FF:10164-103B2 76 years, female 59.4
Globus pallidus
Scaled Tags Per Million: 147.3
FF:10175-103C4 60 years, female 164.9
FF:10161-103A8 76 years, female 129.7
Nucleus accumbens
Scaled Tags Per Million: 61.5
FF:10037-101F1 23-56 years, mixed 61.5
Putamen
Scaled Tags Per Million: 67.9
FF:10176-103C5 60 years, female 67.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 61.9
Pig sample Sample description nTPM
Caudate
nTPM: 42.5
Samples: 4

Max nTPM: 46.3
Min nTPM: 40.6
Sample A Female 40.9
Sample B Female 40.6
Sample C Male 46.3
Sample D Male 42.3
Putamen
nTPM: 58.9
Samples: 4

Max nTPM: 82.8
Min nTPM: 41.4
Sample A Female 82.8
Sample B Female 41.4
Sample C Male 47.9
Sample D Male 63.3
Septum
nTPM: 51.8
Samples: 4

Max nTPM: 55.7
Min nTPM: 47.1
Sample A Female 51.6
Sample B Female 47.1
Sample C Male 52.8
Sample D Male 55.7
Ventral pallidum
nTPM: 61.9
Samples: 4

Max nTPM: 77.5
Min nTPM: 41.2
Sample A Female 41.2
Sample B Female 53.1
Sample C Male 77.5
Sample D Male 75.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 55.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 55.2
Samples: 4

Max nTPM: 59.9
Min nTPM: 50.6
Sample A Male 59.9
Sample B Male 54.2
Sample C Female 56.2
Sample D Female 50.6
Septum
nTPM: 51.3
Samples: 4

Max nTPM: 67.0
Min nTPM: 40.6
Sample A Male 48.9
Sample B Male 40.6
Sample C Female 48.6
Sample D Female 67.0
Ventral forebrain
nTPM: 39.6
Samples: 4

Max nTPM: 43.3
Min nTPM: 31.6
Sample A Male 43.3
Sample B Male 42.5
Sample C Female 31.6
Sample D Female 40.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 7.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.7
75695662 Antisense, RP_060518_04_D01, Mouse strain C57BL/6J (56 days, male) 10.4
73906077 Antisense, RP_051212_04_F08, Mouse strain C57BL/6J (56 days, male) 1.0
Pallidum
Expression energy: 7.2
75695662 Antisense, RP_060518_04_D01, Mouse strain C57BL/6J (56 days, male) 13.3
73906077 Antisense, RP_051212_04_F08, Mouse strain C57BL/6J (56 days, male) 1.1

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.