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LHFPL3
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.8 nTPM
HPA:10.8 nTPM
GTEx:10.4 nTPM
FANTOM5:9.2 Scaled Tags Per Million
Pig:23.7 nTPM
Mouse:50.5 nTPM
Allen mouse:0.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 10.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 9.6
1857 Female, age 85, left hemisphere 14.7
1854 Male, age 80, left hemisphere 10.9
2290 Female, age 72, unknown 10.5
1781 Male, age 74, unknown 9.4
2846 Female, age 79, unknown 8.8
2289 Male, age 61, right hemisphere 8.7
2288 Male, age 75, left hemisphere 7.5
2481 Female, age 94, left hemisphere 6.6
Claustrum
nTPM: 2.4
2392 Female, age 94, both hemispheres 4.3
2491 Male, age 75, both hemispheres 4.3
2196 Female, age 79, unknown 3.2
2198 Male, age 80, both hemispheres 2.4
2568 Male, age 61, both hemispheres 2.1
2284 Female, age 91, both hemispheres 1.8
2292 Female, age 85, both hemispheres 1.7
1956 Male, age 74, unknown 1.2
2645 Female, age 72, unknown 0.5
Globus pallidus, externus
nTPM: 4.9
2772 Female, age 79, unknown 11.3
1996 Male, age 80, right hemisphere 6.6
2646 Male, age 61, right hemisphere 2.4
2395 Male, age 75, both hemispheres 2.3
2567 Female, age 72, unknown 2.1
Globus pallidus, internus
nTPM: 5.6
1818 Male, age 74, unknown 11.8
2037 Male, age 80, right hemisphere 9.4
2483 Female, age 94, right hemisphere 4.5
2778 Female, age 91, both hemispheres 4.2
2111 Female, age 85, right hemisphere 3.4
2287 Male, age 75, right hemisphere 3.3
2566 Female, age 72, unknown 2.9
Nucleus accumbens
nTPM: 10.8
1856 Female, age 91, right hemisphere 16.0
1806 Female, age 85, left hemisphere 14.6
2824 Male, age 61, right hemisphere 14.6
1783 Male, age 74, unknown 10.4
2698 Female, age 72, unknown 10.2
2286 Male, age 75, left hemisphere 7.5
2732 Male, age 80, right hemisphere 7.2
2391 Female, age 94, left hemisphere 6.2
Nucleus basalis of Meynert
nTPM: 5.7
2393 Male, age 80, right hemisphere 8.0
2484 Female, age 94, left hemisphere 7.9
2821 Male, age 75, both hemispheres 4.2
2569 Male, age 61, both hemispheres 2.7
Nucleus of the diagonal band
nTPM: 4.6
1979 Male, age 74, unknown 5.4
1812 Female, age 91, both hemispheres 5.3
2029 Male, age 61, right hemisphere 4.4
2195 Female, age 85, both hemispheres 4.3
2775 Male, age 80, right hemisphere 3.8
Olfactory tubercle
nTPM: 5.8
2856 Male, age 75, right hemisphere 8.6
2487 Female, age 94, left hemisphere 6.5
1998 Female, age 91, both hemispheres 4.1
1846 Male, age 80, right hemisphere 3.9
Putamen
nTPM: 7.5
1838 Male, age 80, right hemisphere 12.0
1937 Female, age 91, right hemisphere 12.0
1829 Male, age 74, unknown 9.0
2466 Female, age 79, unknown 8.1
2482 Female, age 94, left hemisphere 6.3
2489 Female, age 72, unknown 4.0
2647 Male, age 75, left hemisphere 1.1
Septal nuclei
nTPM: 5.3
2394 Male, age 61, left hemisphere 9.1
2199 Male, age 80, right hemisphere 7.3
2059 Female, age 85, both hemispheres 5.9
2629 Female, age 94, right hemisphere 4.5
2009 Female, age 91, both hemispheres 4.2
2031 Female, age 72, unknown 3.9
1960 Male, age 74, unknown 2.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 10.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 8.7
Samples: 246

Max nTPM: 30.4
Min nTPM: 1.8
Std nTPM: 4.2
Median nTPM: 8.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 30.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 27.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 23.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 21.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 20.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 19.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 18.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 18.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 18.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 16.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 15.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 10.4
Samples: 246

Max nTPM: 29.3
Min nTPM: 0.3
Std nTPM: 5.5
Median nTPM: 10.2
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 29.3
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 25.1
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 22.9
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 22.6
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 22.2
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 21.2
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 21.0
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 20.3
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 20.3
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 20.0
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 19.9
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Brain - Putamen (basal ganglia)
Average nTPM: 7.5
Samples: 205

Max nTPM: 27.9
Min nTPM: 0.9
Std nTPM: 4.1
Median nTPM: 6.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 27.9
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 22.5
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 18.6
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 18.4
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 18.0
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 17.9
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 17.8
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 17.1
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 17.1
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 16.9
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 16.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 5.9
FF:10164-103B2 76 years, female 5.9
Globus pallidus
Scaled Tags Per Million: 6.5
FF:10161-103A8 76 years, female 7.5
FF:10175-103C4 60 years, female 5.5
Nucleus accumbens
Scaled Tags Per Million: 9.0
FF:10037-101F1 23-56 years, mixed 9.0
Putamen
Scaled Tags Per Million: 9.2
FF:10176-103C5 60 years, female 9.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 23.7
Pig sample Sample description nTPM
Caudate
nTPM: 15.9
Samples: 4

Max nTPM: 19.4
Min nTPM: 12.9
Sample A Female 19.4
Sample B Female 14.2
Sample C Male 16.9
Sample D Male 12.9
Putamen
nTPM: 17.6
Samples: 4

Max nTPM: 26.7
Min nTPM: 12.7
Sample A Female 26.7
Sample B Female 13.5
Sample C Male 17.3
Sample D Male 12.7
Septum
nTPM: 23.7
Samples: 4

Max nTPM: 27.0
Min nTPM: 20.6
Sample A Female 27.0
Sample B Female 23.6
Sample C Male 23.7
Sample D Male 20.6
Ventral pallidum
nTPM: 23.6
Samples: 4

Max nTPM: 33.3
Min nTPM: 16.4
Sample A Female 22.7
Sample B Female 21.9
Sample C Male 33.3
Sample D Male 16.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 50.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 31.9
Samples: 4

Max nTPM: 34.6
Min nTPM: 29.8
Sample A Male 29.8
Sample B Male 30.2
Sample C Female 33.0
Sample D Female 34.6
Septum
nTPM: 50.5
Samples: 4

Max nTPM: 52.5
Min nTPM: 46.6
Sample A Male 46.6
Sample B Male 52.5
Sample C Female 51.1
Sample D Female 51.6
Ventral forebrain
nTPM: 42.8
Samples: 4

Max nTPM: 46.0
Min nTPM: 39.1
Sample A Male 42.1
Sample B Male 46.0
Sample C Female 39.1
Sample D Female 43.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
73635972 Antisense, RP_051101_03_C05, Mouse strain C57BL/6J (56 days, male) 0.2
70228651 Antisense, RP_050524_04_B08, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.5
73635972 Antisense, RP_051101_03_C05, Mouse strain C57BL/6J (56 days, male) 0.6
70228651 Antisense, RP_050524_04_B08, Mouse strain C57BL/6J (56 days, male) 0.4

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.