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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.2 nTPM
HPA:14.2 nTPM
GTEx:16.1 nTPM
FANTOM5:124.8 Scaled Tags Per Million
Pig:4.5 nTPM
Mouse:23.5 nTPM
Allen mouse:2.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 14.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 12.5
2290 Female, age 72, unknown 15.6
2481 Female, age 94, left hemisphere 15.4
1857 Female, age 85, left hemisphere 13.0
2288 Male, age 75, left hemisphere 12.7
1854 Male, age 80, left hemisphere 11.9
2289 Male, age 61, right hemisphere 10.6
1781 Male, age 74, unknown 10.4
2846 Female, age 79, unknown 10.3
Claustrum
nTPM: 8.6
2196 Female, age 79, unknown 11.6
1956 Male, age 74, unknown 8.6
2491 Male, age 75, both hemispheres 8.6
2645 Female, age 72, unknown 8.6
2392 Female, age 94, both hemispheres 8.4
2198 Male, age 80, both hemispheres 8.2
2568 Male, age 61, both hemispheres 7.9
2284 Female, age 91, both hemispheres 7.7
2292 Female, age 85, both hemispheres 7.4
Globus pallidus, externus
nTPM: 8.7
2646 Male, age 61, right hemisphere 10.4
2567 Female, age 72, unknown 9.2
1996 Male, age 80, right hemisphere 8.6
2772 Female, age 79, unknown 8.4
2395 Male, age 75, both hemispheres 6.9
Globus pallidus, internus
nTPM: 8.6
2483 Female, age 94, right hemisphere 12.9
1818 Male, age 74, unknown 8.8
2037 Male, age 80, right hemisphere 8.7
2566 Female, age 72, unknown 8.1
2287 Male, age 75, right hemisphere 8.0
2111 Female, age 85, right hemisphere 6.9
2778 Female, age 91, both hemispheres 6.9
Nucleus accumbens
nTPM: 11.0
2286 Male, age 75, left hemisphere 12.6
1783 Male, age 74, unknown 12.5
1856 Female, age 91, right hemisphere 11.7
2698 Female, age 72, unknown 11.7
1806 Female, age 85, left hemisphere 11.6
2824 Male, age 61, right hemisphere 9.4
2391 Female, age 94, left hemisphere 9.2
2732 Male, age 80, right hemisphere 9.1
Nucleus basalis of Meynert
nTPM: 14.2
2821 Male, age 75, both hemispheres 23.1
2569 Male, age 61, both hemispheres 13.0
2484 Female, age 94, left hemisphere 11.9
2393 Male, age 80, right hemisphere 8.9
Nucleus of the diagonal band
nTPM: 11.6
2195 Female, age 85, both hemispheres 13.4
2775 Male, age 80, right hemisphere 12.0
2029 Male, age 61, right hemisphere 11.8
1812 Female, age 91, both hemispheres 11.1
1979 Male, age 74, unknown 9.9
Olfactory tubercle
nTPM: 10.7
1846 Male, age 80, right hemisphere 13.0
2856 Male, age 75, right hemisphere 10.3
2487 Female, age 94, left hemisphere 10.2
1998 Female, age 91, both hemispheres 9.2
Putamen
nTPM: 11.0
2482 Female, age 94, left hemisphere 13.6
2489 Female, age 72, unknown 13.2
2647 Male, age 75, left hemisphere 11.7
1838 Male, age 80, right hemisphere 10.2
1937 Female, age 91, right hemisphere 9.6
2466 Female, age 79, unknown 9.4
1829 Male, age 74, unknown 9.3
Septal nuclei
nTPM: 10.9
2059 Female, age 85, both hemispheres 15.1
1960 Male, age 74, unknown 11.6
2629 Female, age 94, right hemisphere 11.3
2031 Female, age 72, unknown 11.2
2009 Female, age 91, both hemispheres 10.6
2199 Male, age 80, right hemisphere 9.0
2394 Male, age 61, left hemisphere 7.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 16.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 16.1
Samples: 246

Max nTPM: 49.6
Min nTPM: 2.6
Std nTPM: 8.1
Median nTPM: 14.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 49.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 45.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 39.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 39.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 38.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 37.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 36.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 35.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 35.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 35.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 34.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 13.8
Samples: 246

Max nTPM: 44.5
Min nTPM: 2.3
Std nTPM: 7.3
Median nTPM: 12.3
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 44.5
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 38.7
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 35.4
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 34.9
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 32.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 32.0
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 31.4
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 31.0
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 30.6
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 30.3
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 30.2
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Brain - Putamen (basal ganglia)
Average nTPM: 14.0
Samples: 205

Max nTPM: 47.9
Min nTPM: 2.2
Std nTPM: 7.4
Median nTPM: 12.4
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 47.9
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 39.2
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 39.0
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 38.8
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 37.2
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 36.2
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 34.9
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 31.0
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 30.4
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 30.2
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 29.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 124.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 124.8
FF:10164-103B2 76 years, female 124.8
Globus pallidus
Scaled Tags Per Million: 55.9
FF:10161-103A8 76 years, female 73.1
FF:10175-103C4 60 years, female 38.6
Nucleus accumbens
Scaled Tags Per Million: 108.2
FF:10037-101F1 23-56 years, mixed 108.2
Putamen
Scaled Tags Per Million: 86.7
FF:10176-103C5 60 years, female 86.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 4.5
Pig sample Sample description nTPM
Caudate
nTPM: 3.1
Samples: 4

Max nTPM: 3.6
Min nTPM: 2.7
Sample A Female 3.4
Sample B Female 2.7
Sample C Male 3.6
Sample D Male 2.8
Putamen
nTPM: 3.2
Samples: 4

Max nTPM: 3.8
Min nTPM: 2.7
Sample A Female 3.2
Sample B Female 2.7
Sample C Male 3.2
Sample D Male 3.8
Septum
nTPM: 4.5
Samples: 4

Max nTPM: 7.6
Min nTPM: 3.0
Sample A Female 3.2
Sample B Female 3.0
Sample C Male 7.6
Sample D Male 4.2
Ventral pallidum
nTPM: 4.6
Samples: 4

Max nTPM: 7.0
Min nTPM: 2.9
Sample A Female 2.9
Sample B Female 7.0
Sample C Male 4.3
Sample D Male 4.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 23.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 10.1
Samples: 4

Max nTPM: 13.0
Min nTPM: 8.6
Sample A Male 13.0
Sample B Male 8.7
Sample C Female 8.6
Sample D Female 10.2
Septum
nTPM: 23.5
Samples: 4

Max nTPM: 29.5
Min nTPM: 16.5
Sample A Male 16.5
Sample B Male 25.4
Sample C Female 29.5
Sample D Female 22.5
Ventral forebrain
nTPM: 10.9
Samples: 4

Max nTPM: 14.8
Min nTPM: 8.1
Sample A Male 8.1
Sample B Male 11.8
Sample C Female 14.8
Sample D Female 8.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.0
68637832 Antisense, RP_050126_01_F12, Mouse strain C57BL/6J (56 days, male) 2.0
Pallidum
Expression energy: 1.4
68637832 Antisense, RP_050126_01_F12, Mouse strain C57BL/6J (56 days, male) 1.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.