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FBF1
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.9 nTPM
HPA:9.9 nTPM
GTEx:9.4 nTPM
FANTOM5:22.7 Scaled Tags Per Million
Pig:5.1 nTPM
Mouse:14.9 nTPM
Allen mouse:2.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 9.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 7.2
2289 Male, age 61, right hemisphere 9.2
1854 Male, age 80, left hemisphere 8.0
2288 Male, age 75, left hemisphere 7.0
2481 Female, age 94, left hemisphere 7.0
2290 Female, age 72, unknown 6.9
2846 Female, age 79, unknown 6.8
1781 Male, age 74, unknown 6.3
1857 Female, age 85, left hemisphere 6.2
Claustrum
nTPM: 7.3
2292 Female, age 85, both hemispheres 8.6
2645 Female, age 72, unknown 8.2
2196 Female, age 79, unknown 7.9
2568 Male, age 61, both hemispheres 7.9
2284 Female, age 91, both hemispheres 7.0
1956 Male, age 74, unknown 6.7
2491 Male, age 75, both hemispheres 6.6
2198 Male, age 80, both hemispheres 6.5
2392 Female, age 94, both hemispheres 6.1
Globus pallidus, externus
nTPM: 9.9
2567 Female, age 72, unknown 13.2
2646 Male, age 61, right hemisphere 11.2
1996 Male, age 80, right hemisphere 9.8
2395 Male, age 75, both hemispheres 8.0
2772 Female, age 79, unknown 7.6
Globus pallidus, internus
nTPM: 9.4
2566 Female, age 72, unknown 12.1
2111 Female, age 85, right hemisphere 11.1
2778 Female, age 91, both hemispheres 9.8
2037 Male, age 80, right hemisphere 9.3
1818 Male, age 74, unknown 8.4
2483 Female, age 94, right hemisphere 8.2
2287 Male, age 75, right hemisphere 6.8
Nucleus accumbens
nTPM: 7.1
2732 Male, age 80, right hemisphere 8.9
2824 Male, age 61, right hemisphere 8.3
1783 Male, age 74, unknown 7.3
1806 Female, age 85, left hemisphere 7.2
2698 Female, age 72, unknown 7.1
1856 Female, age 91, right hemisphere 6.1
2391 Female, age 94, left hemisphere 6.0
2286 Male, age 75, left hemisphere 5.6
Nucleus basalis of Meynert
nTPM: 8.2
2569 Male, age 61, both hemispheres 11.4
2393 Male, age 80, right hemisphere 7.6
2821 Male, age 75, both hemispheres 7.2
2484 Female, age 94, left hemisphere 6.7
Nucleus of the diagonal band
nTPM: 6.0
1979 Male, age 74, unknown 6.4
2029 Male, age 61, right hemisphere 6.3
2775 Male, age 80, right hemisphere 6.0
2195 Female, age 85, both hemispheres 5.9
1812 Female, age 91, both hemispheres 5.4
Olfactory tubercle
nTPM: 6.4
2487 Female, age 94, left hemisphere 7.4
2856 Male, age 75, right hemisphere 6.6
1998 Female, age 91, both hemispheres 5.8
1846 Male, age 80, right hemisphere 5.7
Putamen
nTPM: 8.1
2489 Female, age 72, unknown 10.2
2647 Male, age 75, left hemisphere 8.8
1829 Male, age 74, unknown 8.2
2466 Female, age 79, unknown 8.0
1838 Male, age 80, right hemisphere 7.6
2482 Female, age 94, left hemisphere 7.0
1937 Female, age 91, right hemisphere 6.6
Septal nuclei
nTPM: 6.5
2059 Female, age 85, both hemispheres 7.4
2199 Male, age 80, right hemisphere 7.4
2394 Male, age 61, left hemisphere 7.1
2629 Female, age 94, right hemisphere 6.7
2009 Female, age 91, both hemispheres 5.9
1960 Male, age 74, unknown 5.8
2031 Female, age 72, unknown 5.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 9.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 8.9
Samples: 246

Max nTPM: 18.9
Min nTPM: 2.7
Std nTPM: 2.1
Median nTPM: 8.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 18.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 15.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 15.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 15.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 14.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 13.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 13.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 13.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 13.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 13.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 12.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 9.0
Samples: 246

Max nTPM: 16.3
Min nTPM: 4.0
Std nTPM: 2.2
Median nTPM: 8.8
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 16.3
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 15.8
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 14.9
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 14.5
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 14.4
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 14.2
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 13.5
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 13.4
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 13.4
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 13.4
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 13.1
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Brain - Putamen (basal ganglia)
Average nTPM: 9.4
Samples: 205

Max nTPM: 16.6
Min nTPM: 4.7
Std nTPM: 2.0
Median nTPM: 9.2
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 16.6
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 15.6
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 15.1
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 14.0
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 13.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 13.7
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 13.5
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 13.2
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 13.1
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 13.1
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 13.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 22.7
FF:10164-103B2 76 years, female 22.7
Globus pallidus
Scaled Tags Per Million: 21.4
FF:10161-103A8 76 years, female 30.1
FF:10175-103C4 60 years, female 12.6
Nucleus accumbens
Scaled Tags Per Million: 15.6
FF:10037-101F1 23-56 years, mixed 15.6
Putamen
Scaled Tags Per Million: 18.9
FF:10176-103C5 60 years, female 18.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.1
Pig sample Sample description nTPM
Caudate
nTPM: 4.5
Samples: 4

Max nTPM: 5.4
Min nTPM: 3.9
Sample A Female 3.9
Sample B Female 5.4
Sample C Male 4.3
Sample D Male 4.4
Putamen
nTPM: 4.6
Samples: 4

Max nTPM: 5.4
Min nTPM: 3.3
Sample A Female 5.4
Sample B Female 4.2
Sample C Male 3.3
Sample D Male 5.3
Septum
nTPM: 4.7
Samples: 4

Max nTPM: 5.6
Min nTPM: 3.8
Sample A Female 3.8
Sample B Female 5.0
Sample C Male 4.4
Sample D Male 5.6
Ventral pallidum
nTPM: 5.1
Samples: 4

Max nTPM: 6.1
Min nTPM: 3.4
Sample A Female 3.4
Sample B Female 5.0
Sample C Male 6.0
Sample D Male 6.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 14.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 14.9
Samples: 4

Max nTPM: 18.1
Min nTPM: 12.8
Sample A Male 12.8
Sample B Male 14.5
Sample C Female 18.1
Sample D Female 14.2
Septum
nTPM: 10.8
Samples: 4

Max nTPM: 12.9
Min nTPM: 8.7
Sample A Male 12.9
Sample B Male 8.7
Sample C Female 9.4
Sample D Female 12.2
Ventral forebrain
nTPM: 13.1
Samples: 4

Max nTPM: 14.5
Min nTPM: 10.6
Sample A Male 14.5
Sample B Male 12.7
Sample C Female 10.6
Sample D Female 14.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.1
71497000 Antisense, RP_050913_04_H07, Mouse strain C57BL/6J (56 days, male) 2.1
Pallidum
Expression energy: 1.5
71497000 Antisense, RP_050913_04_H07, Mouse strain C57BL/6J (56 days, male) 1.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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