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MSL1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni
Consensus:32.1 nTPM
HPA:32.1 nTPM
GTEx:41.7 nTPM
FANTOM5:51.3 Scaled Tags Per Million
Pig:36.5 nTPM
Mouse:105.2 nTPM
Allen mouse:13.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA022800Antibody HPA023567
Glial cells LowLow
Neuronal cells Not detectedHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 32.1
Sample id Sample description nTPM
Hippocampus
nTPM: 30.1
2621 Female, age 67, right hemisphere 33.8
2529 Female, age 94, left hemisphere 33.5
2148 Female, age 91, left hemisphere 30.7
1911 Female, age 85, right hemisphere 28.7
1855 Male, age 76, left hemisphere 26.8
1898 Male, age 80, left hemisphere 26.8
Dentate gyrus
nTPM: 29.2
2531 Female, age 67, both hemispheres 35.7
2530 Female, age 94, left hemisphere 31.1
1927 Female, age 91, both hemispheres 30.3
2246 Female, age 85, both hemispheres 27.5
2010 Male, age 76, both hemispheres 27.1
2528 Male, age 74, both hemispheres 23.3
Entorhinal gyrus
nTPM: 32.1
2613 Female, age 94, left hemisphere 36.7
2764 Male, age 80, right hemisphere 33.9
2686 Male, age 75, right hemisphere 33.6
1787 Male, age 76, left hemisphere 31.8
1938 Female, age 85, left hemisphere 28.6
2117 Female, age 91, right hemisphere 27.6
Hippocampus, CA1
nTPM: 28.7
2045 Male, age 76, both hemispheres 30.3
2749 Male, age 80, left hemisphere 30.1
2527 Male, age 74, both hemispheres 29.5
1873 Female, age 85, both hemispheres 29.3
2082 Female, age 91, right hemisphere 24.5
Hippocampus, CA2
nTPM: 27.4
2437 Female, age 94, left hemisphere 30.0
1963 Male, age 80, left hemisphere 29.0
1940 Female, age 85, left hemisphere 27.8
1892 Male, age 76, both hemispheres 27.7
2113 Female, age 91, right hemisphere 27.2
2249 Male, age 74, both hemispheres 22.9
Hippocampus, CA3
nTPM: 29.9
2861 Female, age 67, both hemispheres 43.3
2620 Female, age 94, left hemisphere 35.7
2137 Male, age 80, left hemisphere 29.4
1891 Female, age 85, both hemispheres 28.4
1867 Male, age 76, both hemispheres 22.8
2436 Male, age 74, both hemispheres 19.9
Parahippocampal cortex
nTPM: 30.3
2622 Female, age 67, right hemisphere 36.7
2245 Female, age 91, both hemispheres 33.3
2693 Female, age 94, both hemispheres 32.2
1850 Male, age 80, both hemispheres 30.5
2532 Female, age 72, left hemisphere 29.8
1933 Female, age 85, both hemispheres 28.7
2018 Male, age 76, both hemispheres 28.6
2692 Male, age 74, both hemispheres 28.4
2250 Female, age 67, right hemisphere 28.0
1990 Female, age 91, right hemisphere 27.0
Perirhinal gyrus
nTPM: 31.7
2521 Female, age 94, right hemisphere 32.0
1841 Female, age 85, right hemisphere 31.9
1794 Male, age 80, right hemisphere 31.7
1847 Female, age 91, left hemisphere 31.4
2848 Male, age 76, right hemisphere 31.3
Subiculum
nTPM: 26.1
2619 Male, age 74, both hemispheres 29.6
1901 Male, age 80, both hemispheres 26.8
1977 Female, age 85, both hemispheres 26.3
2729 Female, age 91, right hemisphere 25.8
2042 Male, age 76, both hemispheres 25.5
2438 Female, age 94, left hemisphere 22.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 41.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 41.7
Samples: 197

Max nTPM: 71.9
Min nTPM: 22.7
Std nTPM: 9.0
Median nTPM: 40.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 71.9
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 68.0
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 66.0
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 65.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 63.3
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 62.6
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 61.9
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 60.3
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 60.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 58.9
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 58.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 51.3
FF:10153-102I9 76 years, female 53.5
FF:10169-103B7 60 years, female 49.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 36.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 33.1
Samples: 4

Max nTPM: 36.7
Min nTPM: 30.8
Sample A Female 36.7
Sample B Female 33.1
Sample C Male 30.8
Sample D Male 31.7
Entorhinal cortex
nTPM: 36.0
Samples: 4

Max nTPM: 38.5
Min nTPM: 33.1
Sample A Female 35.9
Sample B Female 36.3
Sample C Male 38.5
Sample D Male 33.1
Subiculum
nTPM: 36.5
Samples: 4

Max nTPM: 44.9
Min nTPM: 30.9
Sample A Female 44.9
Sample B Female 36.0
Sample C Male 34.2
Sample D Male 30.9
Ventral hippocampus
nTPM: 31.6
Samples: 4

Max nTPM: 36.9
Min nTPM: 27.7
Sample A Female 27.7
Sample B Female 28.6
Sample C Male 36.9
Sample D Male 33.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 105.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 105.2
Samples: 4

Max nTPM: 114.6
Min nTPM: 95.4
Sample A Male 95.4
Sample B Male 106.3
Sample C Female 104.5
Sample D Female 114.6
Hippocampal formation
nTPM: 88.9
Samples: 4

Max nTPM: 91.5
Min nTPM: 85.6
Sample A Male 88.8
Sample B Male 91.5
Sample C Female 89.7
Sample D Female 85.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 13.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 13.1
71656894 Antisense, RP_050927_04_E04, Mouse strain C57BL/6J (56 days, male) 13.1

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The Human Protein Atlas

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