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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.0 nTPM
HPA:17.0 nTPM
GTEx:20.9 nTPM
FANTOM5:27.2 Scaled Tags Per Million
Pig:13.1 nTPM
Mouse:30.2 nTPM
Allen mouse:3.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 17.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.1
1827 Male, age 72, unknown 17.2
2666 Male, age 74, left hemisphere 17.1
2019 Male, age 18, unknown 17.0
2219 Male, age 76, both hemispheres 16.8
2411 Female, age 72, unknown 16.8
2586 Male, age 75, left hemisphere 16.4
2828 Female, age 72, unknown 15.3
1833 Male, age 53, unknown 15.1
1870 Female, age 42, unknown 14.8
1830 Male, age 51, unknown 14.3
Dorsal raphe nucleus
nTPM: 15.4
2750 Male, age 76, both hemispheres 17.0
2298 Female, age 72, unknown 16.3
2047 Male, age 72, unknown 15.4
1828 Male, age 53, unknown 15.3
2016 Female, age 72, unknown 12.9
Inferior colliculus
nTPM: 14.7
2097 Female, age 72, unknown 15.8
1890 Male, age 53, unknown 14.6
1848 Female, age 42, unknown 14.5
2849 Male, age 72, unknown 14.0
Median raphe nucleus
nTPM: 16.3
2220 Male, age 76, midline 16.3
Pedunculopontine tegmental nucleus
nTPM: 15.5
2334 Male, age 80, both hemispheres 17.2
1921 Female, age 85, both hemispheres 15.6
2338 Male, age 61, both hemispheres 13.8
Periaquaductal grey, anterior
nTPM: 17.0
1795 Male, age 51, unknown 17.4
2502 Female, age 75, unknown 17.1
1947 Male, age 18, unknown 16.5
Periaquaductal grey, dorsal
nTPM: 14.0
2464 Female, age 72, unknown 14.5
1840 Male, age 53, unknown 14.3
1831 Male, age 72, unknown 14.1
2850 Male, age 76, both hemispheres 13.0
Periaquaductal grey, lateral
nTPM: 13.9
2272 Male, age 74, both hemispheres 15.1
2053 Male, age 18, unknown 14.2
2140 Male, age 76, both hemispheres 12.5
Pretectal area
nTPM: 16.8
1816 Male, age 51, unknown 20.0
2007 Male, age 72, unknown 19.6
1944 Female, age 72, unknown 18.9
1817 Female, age 42, unknown 18.6
1815 Male, age 53, unknown 17.6
2667 Female, age 75, unknown 16.9
2407 Male, age 75, both hemispheres 15.4
2224 Female, age 72, unknown 14.9
2316 Male, age 76, right hemisphere 14.4
2825 Male, age 18, unknown 14.4
2273 Male, age 74, both hemispheres 14.0
Red nucleus
nTPM: 15.4
2785 Male, age 18, unknown 16.9
1821 Female, age 72, unknown 16.1
2584 Male, age 75, left hemisphere 16.0
2725 Female, age 75, unknown 16.0
2588 Male, age 74, left hemisphere 15.6
2769 Male, age 72, unknown 15.4
2503 Female, age 72, unknown 15.2
2227 Male, age 72, unknown 14.9
1904 Male, age 53, unknown 14.8
1954 Female, age 42, unknown 14.8
1865 Male, age 51, unknown 14.6
2823 Male, age 76, right hemisphere 14.3
Substantia nigra
nTPM: 16.6
1916 Female, age 42, unknown 20.2
1851 Male, age 51, unknown 17.9
1889 Female, age 72, unknown 17.9
1941 Male, age 53, unknown 17.9
2409 Female, age 72, unknown 16.5
2665 Male, age 74, both hemispheres 16.1
2583 Male, age 75, right hemisphere 15.3
2241 Male, age 72, unknown 15.2
2699 Male, age 18, unknown 14.9
2590 Female, age 75, unknown 14.5
Superior colliculus
nTPM: 15.7
2087 Female, age 72, unknown 17.9
2261 Male, age 18, unknown 17.3
1796 Male, age 53, unknown 17.2
2668 Female, age 75, unknown 16.8
1895 Male, age 76, right hemisphere 15.7
1839 Male, age 51, unknown 15.1
1913 Female, age 42, unknown 14.8
2587 Male, age 74, left hemisphere 14.8
1995 Male, age 72, unknown 14.3
2664 Male, age 75, both hemispheres 13.2
Ventral tegmental area
nTPM: 15.9
2410 Female, age 72, unknown 17.8
2218 Male, age 76, both hemispheres 17.6
1915 Female, age 42, unknown 16.9
1942 Male, age 51, unknown 14.6
2223 Female, age 72, unknown 14.6
2021 Male, age 53, unknown 13.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.9
Samples: 139

Max nTPM: 42.4
Min nTPM: 10.6
Std nTPM: 5.7
Median nTPM: 19.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 42.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 40.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 37.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 35.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 34.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 32.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 31.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 30.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 30.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 29.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 29.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.2
FF:10158-103A5 76 years, female 27.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.1
Pig sample Sample description nTPM
Midbrain
nTPM: 12.6
Samples: 4

Max nTPM: 14.8
Min nTPM: 11.5
Sample A Female 12.5
Sample B Female 11.5
Sample C Male 14.8
Sample D Male 11.7
Periaqueductal gray
nTPM: 10.7
Samples: 3

Max nTPM: 11.3
Min nTPM: 9.9
Sample B Female 11.3
Sample C Male 10.8
Sample D Male 9.9
Substantia nigra
nTPM: 11.9
Samples: 4

Max nTPM: 13.8
Min nTPM: 9.5
Sample A Female 13.8
Sample B Female 10.8
Sample C Male 13.4
Sample D Male 9.5
Superior colliculi
nTPM: 13.1
Samples: 4

Max nTPM: 14.5
Min nTPM: 11.5
Sample A Female 13.9
Sample B Female 11.5
Sample C Male 14.5
Sample D Male 12.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.2
Samples: 4

Max nTPM: 31.4
Min nTPM: 28.7
Sample A Male 28.7
Sample B Male 29.8
Sample C Female 31.4
Sample D Female 31.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
583872 Antisense, RP_040831_01_C12, Mouse strain C57BL/6J (56 days, male) 3.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.