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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:189.6 nTPM
HPA:189.6 nTPM
GTEx:223.5 nTPM
FANTOM5:499.9 Scaled Tags Per Million
Pig:758.0 nTPM
Mouse:994.2 nTPM
Allen mouse:6.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 189.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 180.6
2019 Male, age 18, unknown 187.9
1827 Male, age 72, unknown 186.2
2411 Female, age 72, unknown 185.0
1870 Female, age 42, unknown 181.9
2586 Male, age 75, left hemisphere 179.6
2828 Female, age 72, unknown 178.1
1833 Male, age 53, unknown 177.3
2666 Male, age 74, left hemisphere 177.1
1830 Male, age 51, unknown 176.8
2219 Male, age 76, both hemispheres 176.0
Dorsal raphe nucleus
nTPM: 182.2
2298 Female, age 72, unknown 191.7
2047 Male, age 72, unknown 181.6
1828 Male, age 53, unknown 181.4
2750 Male, age 76, both hemispheres 180.3
2016 Female, age 72, unknown 175.8
Inferior colliculus
nTPM: 189.6
2097 Female, age 72, unknown 202.1
1890 Male, age 53, unknown 192.7
1848 Female, age 42, unknown 184.3
2849 Male, age 72, unknown 179.2
Median raphe nucleus
nTPM: 175.2
2220 Male, age 76, midline 175.2
Pedunculopontine tegmental nucleus
nTPM: 183.6
1921 Female, age 85, both hemispheres 185.2
2334 Male, age 80, both hemispheres 184.7
2338 Male, age 61, both hemispheres 181.0
Periaquaductal grey, anterior
nTPM: 182.2
1947 Male, age 18, unknown 185.3
1795 Male, age 51, unknown 181.3
2502 Female, age 75, unknown 180.0
Periaquaductal grey, dorsal
nTPM: 177.4
1840 Male, age 53, unknown 179.4
2464 Female, age 72, unknown 179.1
1831 Male, age 72, unknown 177.3
2850 Male, age 76, both hemispheres 173.9
Periaquaductal grey, lateral
nTPM: 177.9
2053 Male, age 18, unknown 181.9
2272 Male, age 74, both hemispheres 179.5
2140 Male, age 76, both hemispheres 172.2
Pretectal area
nTPM: 187.5
1816 Male, age 51, unknown 201.3
2007 Male, age 72, unknown 200.7
1817 Female, age 42, unknown 195.6
1944 Female, age 72, unknown 192.7
1815 Male, age 53, unknown 188.1
2667 Female, age 75, unknown 185.4
2224 Female, age 72, unknown 183.2
2273 Male, age 74, both hemispheres 182.8
2316 Male, age 76, right hemisphere 178.4
2825 Male, age 18, unknown 177.4
2407 Male, age 75, both hemispheres 177.3
Red nucleus
nTPM: 184.1
1821 Female, age 72, unknown 195.7
2725 Female, age 75, unknown 187.7
2503 Female, age 72, unknown 186.5
2785 Male, age 18, unknown 185.7
2588 Male, age 74, left hemisphere 185.3
2769 Male, age 72, unknown 182.5
1865 Male, age 51, unknown 182.4
2227 Male, age 72, unknown 182.4
2584 Male, age 75, left hemisphere 182.0
2823 Male, age 76, right hemisphere 181.2
1954 Female, age 42, unknown 179.2
1904 Male, age 53, unknown 178.5
Substantia nigra
nTPM: 184.7
1889 Female, age 72, unknown 194.0
1941 Male, age 53, unknown 189.7
1851 Male, age 51, unknown 187.2
2241 Male, age 72, unknown 185.5
1916 Female, age 42, unknown 185.3
2665 Male, age 74, both hemispheres 184.8
2590 Female, age 75, unknown 183.2
2409 Female, age 72, unknown 182.3
2583 Male, age 75, right hemisphere 180.1
2699 Male, age 18, unknown 175.3
Superior colliculus
nTPM: 183.2
2587 Male, age 74, left hemisphere 188.3
2087 Female, age 72, unknown 187.6
1796 Male, age 53, unknown 185.6
2261 Male, age 18, unknown 185.5
1895 Male, age 76, right hemisphere 185.3
2668 Female, age 75, unknown 183.9
1913 Female, age 42, unknown 181.3
1839 Male, age 51, unknown 180.5
1995 Male, age 72, unknown 178.1
2664 Male, age 75, both hemispheres 175.9
Ventral tegmental area
nTPM: 182.7
2410 Female, age 72, unknown 186.7
2223 Female, age 72, unknown 186.6
1915 Female, age 42, unknown 186.1
2218 Male, age 76, both hemispheres 180.7
1942 Male, age 51, unknown 178.2
2021 Male, age 53, unknown 178.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 223.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 223.5
Samples: 139

Max nTPM: 640.6
Min nTPM: 111.6
Std nTPM: 70.0
Median nTPM: 209.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 640.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 459.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 409.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 380.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 365.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 362.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 342.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 341.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 337.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 327.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 327.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 499.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 499.9
FF:10158-103A5 76 years, female 499.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 758.0
Pig sample Sample description nTPM
Midbrain
nTPM: 615.3
Samples: 4

Max nTPM: 745.4
Min nTPM: 519.5
Sample A Female 585.6
Sample B Female 519.5
Sample C Male 745.4
Sample D Male 610.8
Periaqueductal gray
nTPM: 404.6
Samples: 3

Max nTPM: 448.8
Min nTPM: 357.5
Sample B Female 407.6
Sample C Male 448.8
Sample D Male 357.5
Substantia nigra
nTPM: 501.6
Samples: 4

Max nTPM: 714.8
Min nTPM: 363.4
Sample A Female 714.8
Sample B Female 443.7
Sample C Male 484.4
Sample D Male 363.4
Superior colliculi
nTPM: 758.0
Samples: 4

Max nTPM: 896.9
Min nTPM: 612.1
Sample A Female 856.6
Sample B Female 666.5
Sample C Male 896.9
Sample D Male 612.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 994.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 994.2
Samples: 4

Max nTPM: 1012.6
Min nTPM: 976.3
Sample A Male 1012.6
Sample B Male 998.0
Sample C Female 976.3
Sample D Female 990.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.5
69782139 Antisense, RP_050505_02_D07, Mouse strain C57BL/6J (56 days, male) 6.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.