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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:201.9 nTPM
HPA:201.9 nTPM
GTEx:249.6 nTPM
FANTOM5:974.9 Scaled Tags Per Million
Pig:570.8 nTPM
Mouse:1003.8 nTPM
Allen mouse:6.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA078265
Glial cells Low
Neuronal cells Medium


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 201.9
Sample id Sample description nTPM
Hippocampus
nTPM: 193.3
1898 Male, age 80, left hemisphere 212.3
2621 Female, age 67, right hemisphere 195.6
2529 Female, age 94, left hemisphere 192.6
1855 Male, age 76, left hemisphere 190.7
1911 Female, age 85, right hemisphere 184.3
2148 Female, age 91, left hemisphere 184.1
Dentate gyrus
nTPM: 195.0
1927 Female, age 91, both hemispheres 205.9
2530 Female, age 94, left hemisphere 203.1
2010 Male, age 76, both hemispheres 201.1
2528 Male, age 74, both hemispheres 190.3
2246 Female, age 85, both hemispheres 188.1
2531 Female, age 67, both hemispheres 181.6
Entorhinal gyrus
nTPM: 186.1
2764 Male, age 80, right hemisphere 193.4
1787 Male, age 76, left hemisphere 191.7
1938 Female, age 85, left hemisphere 191.1
2613 Female, age 94, left hemisphere 183.5
2117 Female, age 91, right hemisphere 180.1
2686 Male, age 75, right hemisphere 176.5
Hippocampus, CA1
nTPM: 201.9
2749 Male, age 80, left hemisphere 232.0
2527 Male, age 74, both hemispheres 199.8
1873 Female, age 85, both hemispheres 195.9
2045 Male, age 76, both hemispheres 194.9
2082 Female, age 91, right hemisphere 186.7
Hippocampus, CA2
nTPM: 199.4
1892 Male, age 76, both hemispheres 215.8
1963 Male, age 80, left hemisphere 212.9
2249 Male, age 74, both hemispheres 206.3
2437 Female, age 94, left hemisphere 196.5
2113 Female, age 91, right hemisphere 184.9
1940 Female, age 85, left hemisphere 179.9
Hippocampus, CA3
nTPM: 192.9
2137 Male, age 80, left hemisphere 204.3
1867 Male, age 76, both hemispheres 202.4
2436 Male, age 74, both hemispheres 197.6
1891 Female, age 85, both hemispheres 190.1
2620 Female, age 94, left hemisphere 182.7
2861 Female, age 67, both hemispheres 180.0
Parahippocampal cortex
nTPM: 189.6
2250 Female, age 67, right hemisphere 204.1
1850 Male, age 80, both hemispheres 200.7
1990 Female, age 91, right hemisphere 194.4
2245 Female, age 91, both hemispheres 192.2
2018 Male, age 76, both hemispheres 192.1
1933 Female, age 85, both hemispheres 188.7
2693 Female, age 94, both hemispheres 185.9
2532 Female, age 72, left hemisphere 183.0
2692 Male, age 74, both hemispheres 178.1
2622 Female, age 67, right hemisphere 176.8
Perirhinal gyrus
nTPM: 200.7
1847 Female, age 91, left hemisphere 213.9
1794 Male, age 80, right hemisphere 209.4
1841 Female, age 85, right hemisphere 198.1
2521 Female, age 94, right hemisphere 194.9
2848 Male, age 76, right hemisphere 187.1
Subiculum
nTPM: 190.2
1901 Male, age 80, both hemispheres 196.4
1977 Female, age 85, both hemispheres 196.2
2619 Male, age 74, both hemispheres 189.6
2438 Female, age 94, left hemisphere 189.1
2042 Male, age 76, both hemispheres 185.5
2729 Female, age 91, right hemisphere 184.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 249.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 249.6
Samples: 197

Max nTPM: 844.6
Min nTPM: 90.1
Std nTPM: 100.9
Median nTPM: 227.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 844.6
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 602.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 551.4
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 524.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 517.7
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 472.6
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 469.3
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 468.9
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 454.7
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 435.5
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 429.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 974.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 974.9
FF:10169-103B7 60 years, female 1349.8
FF:10153-102I9 76 years, female 600.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 570.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 540.2
Samples: 4

Max nTPM: 694.2
Min nTPM: 380.5
Sample A Female 694.2
Sample B Female 476.9
Sample C Male 609.3
Sample D Male 380.5
Entorhinal cortex
nTPM: 570.8
Samples: 4

Max nTPM: 774.1
Min nTPM: 423.2
Sample A Female 489.5
Sample B Female 774.1
Sample C Male 596.5
Sample D Male 423.2
Subiculum
nTPM: 444.4
Samples: 4

Max nTPM: 588.2
Min nTPM: 392.4
Sample A Female 588.2
Sample B Female 401.8
Sample C Male 395.0
Sample D Male 392.4
Ventral hippocampus
nTPM: 475.2
Samples: 4

Max nTPM: 579.3
Min nTPM: 384.7
Sample A Female 579.3
Sample B Female 384.7
Sample C Male 474.0
Sample D Male 462.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 1003.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 931.3
Samples: 4

Max nTPM: 978.4
Min nTPM: 860.1
Sample A Male 921.1
Sample B Male 965.5
Sample C Female 978.4
Sample D Female 860.1
Hippocampal formation
nTPM: 1003.8
Samples: 4

Max nTPM: 1189.8
Min nTPM: 909.6
Sample A Male 1189.8
Sample B Male 909.6
Sample C Female 970.0
Sample D Female 945.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.9
69782139 Antisense, RP_050505_02_D07, Mouse strain C57BL/6J (56 days, male) 6.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.