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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1040.5 nTPM
HPA:1040.5 nTPM
GTEx:805.5 nTPM
FANTOM5:3812.3 Scaled Tags Per Million
Pig:1540.9 nTPM
Mouse:328.7 nTPM
Allen mouse:15.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1040.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 958.5
2411 Female, age 72, unknown 1081.1
1830 Male, age 51, unknown 1071.4
1870 Female, age 42, unknown 1037.5
1833 Male, age 53, unknown 1029.2
2019 Male, age 18, unknown 983.9
2828 Female, age 72, unknown 942.2
2219 Male, age 76, both hemispheres 932.3
1827 Male, age 72, unknown 881.6
2666 Male, age 74, left hemisphere 840.0
2586 Male, age 75, left hemisphere 785.8
Dorsal raphe nucleus
nTPM: 907.7
2750 Male, age 76, both hemispheres 1093.4
2016 Female, age 72, unknown 899.0
1828 Male, age 53, unknown 880.3
2298 Female, age 72, unknown 833.5
2047 Male, age 72, unknown 832.5
Inferior colliculus
nTPM: 898.2
1890 Male, age 53, unknown 925.3
2849 Male, age 72, unknown 906.6
1848 Female, age 42, unknown 901.5
2097 Female, age 72, unknown 859.5
Median raphe nucleus
nTPM: 934.3
2220 Male, age 76, midline 934.3
Pedunculopontine tegmental nucleus
nTPM: 972.6
2334 Male, age 80, both hemispheres 989.5
2338 Male, age 61, both hemispheres 976.0
1921 Female, age 85, both hemispheres 952.4
Periaquaductal grey, anterior
nTPM: 881.6
2502 Female, age 75, unknown 960.3
1947 Male, age 18, unknown 861.5
1795 Male, age 51, unknown 823.0
Periaquaductal grey, dorsal
nTPM: 865.2
2464 Female, age 72, unknown 902.6
1831 Male, age 72, unknown 872.5
2850 Male, age 76, both hemispheres 867.0
1840 Male, age 53, unknown 818.7
Periaquaductal grey, lateral
nTPM: 887.8
2272 Male, age 74, both hemispheres 934.4
2053 Male, age 18, unknown 880.1
2140 Male, age 76, both hemispheres 849.0
Pretectal area
nTPM: 907.9
2667 Female, age 75, unknown 997.7
1815 Male, age 53, unknown 967.6
1817 Female, age 42, unknown 936.2
2316 Male, age 76, right hemisphere 931.9
2273 Male, age 74, both hemispheres 917.1
2407 Male, age 75, both hemispheres 904.3
2007 Male, age 72, unknown 890.8
2825 Male, age 18, unknown 887.3
1944 Female, age 72, unknown 869.6
2224 Female, age 72, unknown 863.6
1816 Male, age 51, unknown 821.0
Red nucleus
nTPM: 1040.5
1865 Male, age 51, unknown 1191.0
1821 Female, age 72, unknown 1143.9
2823 Male, age 76, right hemisphere 1134.4
1904 Male, age 53, unknown 1089.6
2503 Female, age 72, unknown 1076.0
2227 Male, age 72, unknown 1050.8
2769 Male, age 72, unknown 1045.0
1954 Female, age 42, unknown 1041.4
2785 Male, age 18, unknown 1039.8
2588 Male, age 74, left hemisphere 913.4
2584 Male, age 75, left hemisphere 912.1
2725 Female, age 75, unknown 849.0
Substantia nigra
nTPM: 930.6
2699 Male, age 18, unknown 1016.7
2409 Female, age 72, unknown 983.2
2590 Female, age 75, unknown 968.1
1851 Male, age 51, unknown 960.3
1889 Female, age 72, unknown 958.9
2241 Male, age 72, unknown 917.5
2583 Male, age 75, right hemisphere 898.0
1916 Female, age 42, unknown 877.8
2665 Male, age 74, both hemispheres 863.9
1941 Male, age 53, unknown 861.4
Superior colliculus
nTPM: 933.3
1913 Female, age 42, unknown 1049.7
1995 Male, age 72, unknown 1038.6
1895 Male, age 76, right hemisphere 1010.5
2587 Male, age 74, left hemisphere 1006.6
1839 Male, age 51, unknown 948.1
1796 Male, age 53, unknown 885.6
2087 Female, age 72, unknown 878.6
2668 Female, age 75, unknown 875.9
2261 Male, age 18, unknown 843.0
2664 Male, age 75, both hemispheres 796.0
Ventral tegmental area
nTPM: 965.6
2223 Female, age 72, unknown 1047.9
2410 Female, age 72, unknown 1020.6
2218 Male, age 76, both hemispheres 972.0
2021 Male, age 53, unknown 939.1
1915 Female, age 42, unknown 917.3
1942 Male, age 51, unknown 896.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 805.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 805.5
Samples: 139

Max nTPM: 2439.3
Min nTPM: 259.8
Std nTPM: 348.5
Median nTPM: 752.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 2439.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2127.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 1636.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 1585.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1544.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 1539.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 1503.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1482.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1381.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1358.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 1338.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 3812.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3812.3
FF:10158-103A5 76 years, female 3812.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 1540.9
Pig sample Sample description nTPM
Midbrain
nTPM: 1540.9
Samples: 4

Max nTPM: 4320.8
Min nTPM: 401.9
Sample A Female 4320.8
Sample B Female 868.1
Sample C Male 572.8
Sample D Male 401.9
Periaqueductal gray
nTPM: 575.9
Samples: 3

Max nTPM: 710.5
Min nTPM: 407.5
Sample B Female 710.5
Sample C Male 407.5
Sample D Male 609.8
Substantia nigra
nTPM: 1153.9
Samples: 4

Max nTPM: 1830.4
Min nTPM: 764.2
Sample A Female 1045.6
Sample B Female 764.2
Sample C Male 975.4
Sample D Male 1830.4
Superior colliculi
nTPM: 901.5
Samples: 4

Max nTPM: 1146.5
Min nTPM: 425.1
Sample A Female 960.8
Sample B Female 425.1
Sample C Male 1146.5
Sample D Male 1073.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 328.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 328.7
Samples: 4

Max nTPM: 345.0
Min nTPM: 312.0
Sample A Male 345.0
Sample B Male 331.3
Sample C Female 326.5
Sample D Female 312.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.2
71380893 Antisense, RP_050421_01_F01, Mouse strain C57BL/6J (56 days, male) 15.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.