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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:64.9 nTPM
HPA:64.9 nTPM
GTEx:92.2 nTPM
FANTOM5:420.1 Scaled Tags Per Million
Pig:48.5 nTPM
Mouse:121.1 nTPM
Allen mouse:6.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 64.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 55.9
1870 Female, age 42, unknown 70.6
2411 Female, age 72, unknown 70.2
1830 Male, age 51, unknown 67.0
1833 Male, age 53, unknown 62.4
2219 Male, age 76, both hemispheres 55.4
2019 Male, age 18, unknown 53.9
2828 Female, age 72, unknown 50.8
2666 Male, age 74, left hemisphere 47.2
1827 Male, age 72, unknown 46.9
2586 Male, age 75, left hemisphere 34.5
Dorsal raphe nucleus
nTPM: 46.7
2750 Male, age 76, both hemispheres 65.7
2016 Female, age 72, unknown 50.0
1828 Male, age 53, unknown 44.0
2298 Female, age 72, unknown 38.9
2047 Male, age 72, unknown 34.8
Inferior colliculus
nTPM: 47.7
2849 Male, age 72, unknown 49.3
1848 Female, age 42, unknown 49.2
2097 Female, age 72, unknown 48.5
1890 Male, age 53, unknown 43.8
Median raphe nucleus
nTPM: 39.8
2220 Male, age 76, midline 39.8
Pedunculopontine tegmental nucleus
nTPM: 56.7
2334 Male, age 80, both hemispheres 66.7
1921 Female, age 85, both hemispheres 55.0
2338 Male, age 61, both hemispheres 48.3
Periaquaductal grey, anterior
nTPM: 43.6
2502 Female, age 75, unknown 53.1
1947 Male, age 18, unknown 43.0
1795 Male, age 51, unknown 34.7
Periaquaductal grey, dorsal
nTPM: 39.2
2464 Female, age 72, unknown 49.5
1840 Male, age 53, unknown 38.2
1831 Male, age 72, unknown 36.9
2850 Male, age 76, both hemispheres 32.2
Periaquaductal grey, lateral
nTPM: 41.1
2053 Male, age 18, unknown 46.3
2272 Male, age 74, both hemispheres 44.1
2140 Male, age 76, both hemispheres 33.0
Pretectal area
nTPM: 44.5
2316 Male, age 76, right hemisphere 55.9
1815 Male, age 53, unknown 55.1
2825 Male, age 18, unknown 48.8
2007 Male, age 72, unknown 47.9
2224 Female, age 72, unknown 46.0
1817 Female, age 42, unknown 45.6
2407 Male, age 75, both hemispheres 44.4
2273 Male, age 74, both hemispheres 44.2
1816 Male, age 51, unknown 34.6
1944 Female, age 72, unknown 33.6
2667 Female, age 75, unknown 33.3
Red nucleus
nTPM: 64.9
1821 Female, age 72, unknown 82.1
1865 Male, age 51, unknown 77.5
1904 Male, age 53, unknown 72.4
2823 Male, age 76, right hemisphere 69.7
2503 Female, age 72, unknown 67.5
1954 Female, age 42, unknown 66.5
2227 Male, age 72, unknown 65.3
2769 Male, age 72, unknown 64.1
2725 Female, age 75, unknown 60.9
2785 Male, age 18, unknown 57.2
2588 Male, age 74, left hemisphere 48.9
2584 Male, age 75, left hemisphere 46.1
Substantia nigra
nTPM: 56.3
2699 Male, age 18, unknown 65.2
1851 Male, age 51, unknown 64.6
2409 Female, age 72, unknown 63.7
2590 Female, age 75, unknown 59.3
2241 Male, age 72, unknown 59.2
1916 Female, age 42, unknown 57.3
1889 Female, age 72, unknown 57.1
1941 Male, age 53, unknown 49.8
2583 Male, age 75, right hemisphere 48.4
2665 Male, age 74, both hemispheres 38.5
Superior colliculus
nTPM: 52.4
1913 Female, age 42, unknown 69.2
1895 Male, age 76, right hemisphere 65.8
1995 Male, age 72, unknown 65.6
2587 Male, age 74, left hemisphere 62.4
1839 Male, age 51, unknown 56.0
2668 Female, age 75, unknown 53.1
1796 Male, age 53, unknown 44.8
2087 Female, age 72, unknown 39.1
2261 Male, age 18, unknown 37.1
2664 Male, age 75, both hemispheres 31.1
Ventral tegmental area
nTPM: 54.5
2410 Female, age 72, unknown 68.7
2223 Female, age 72, unknown 56.4
2218 Male, age 76, both hemispheres 55.0
1915 Female, age 42, unknown 53.8
1942 Male, age 51, unknown 46.8
2021 Male, age 53, unknown 46.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 92.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 92.2
Samples: 139

Max nTPM: 273.2
Min nTPM: 21.3
Std nTPM: 42.1
Median nTPM: 81.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 273.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 234.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 225.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 211.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 199.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 197.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 182.8
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 179.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 173.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 172.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 166.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 420.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 420.1
FF:10158-103A5 76 years, female 420.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 48.5
Pig sample Sample description nTPM
Midbrain
nTPM: 34.3
Samples: 4

Max nTPM: 89.7
Min nTPM: 3.4
Sample A Female 3.4
Sample B Female 13.2
Sample C Male 89.7
Sample D Male 30.7
Periaqueductal gray
nTPM: 18.3
Samples: 3

Max nTPM: 24.8
Min nTPM: 14.6
Sample B Female 15.5
Sample C Male 24.8
Sample D Male 14.6
Substantia nigra
nTPM: 12.7
Samples: 4

Max nTPM: 17.6
Min nTPM: 6.6
Sample A Female 17.6
Sample B Female 11.3
Sample C Male 15.4
Sample D Male 6.6
Superior colliculi
nTPM: 48.5
Samples: 4

Max nTPM: 93.2
Min nTPM: 24.2
Sample A Female 30.6
Sample B Female 24.2
Sample C Male 93.2
Sample D Male 45.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 121.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 121.1
Samples: 4

Max nTPM: 126.5
Min nTPM: 116.9
Sample A Male 120.4
Sample B Male 126.5
Sample C Female 120.5
Sample D Female 116.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.6
583547 Antisense, RP_040831_02_G04, Mouse strain C57BL/6J (56 days, male) 7.7
70634298 Antisense, RP_050725_01_F03, Mouse strain C57BL/6J (56 days, male) 5.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.