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HLA-DRB1
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:7.8 nTPM
HPA:7.8 nTPM
GTEx:38.4 nTPM
FANTOM5:10.1 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA043151Antibody CAB015400Antibody CAB034021
Glial cells Not detectedNot detectedNot detected
Neuronal cells Not detectedNot detectedNot detected





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 7.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.7
1781 Male, age 74, unknown 6.5
2846 Female, age 79, unknown 6.3
2481 Female, age 94, left hemisphere 6.0
1854 Male, age 80, left hemisphere 5.9
2289 Male, age 61, right hemisphere 5.7
1857 Female, age 85, left hemisphere 5.6
2290 Female, age 72, unknown 5.2
2288 Male, age 75, left hemisphere 4.7
Claustrum
nTPM: 7.8
2196 Female, age 79, unknown 27.7
2198 Male, age 80, both hemispheres 5.9
2292 Female, age 85, both hemispheres 5.8
2568 Male, age 61, both hemispheres 5.7
1956 Male, age 74, unknown 5.6
2392 Female, age 94, both hemispheres 5.0
2645 Female, age 72, unknown 4.9
2491 Male, age 75, both hemispheres 4.8
2284 Female, age 91, both hemispheres 4.6
Globus pallidus, externus
nTPM: 6.6
2395 Male, age 75, both hemispheres 9.8
1996 Male, age 80, right hemisphere 6.4
2772 Female, age 79, unknown 6.2
2646 Male, age 61, right hemisphere 5.7
2567 Female, age 72, unknown 5.0
Globus pallidus, internus
nTPM: 6.0
2778 Female, age 91, both hemispheres 6.5
2566 Female, age 72, unknown 6.3
2483 Female, age 94, right hemisphere 6.2
2037 Male, age 80, right hemisphere 6.0
1818 Male, age 74, unknown 5.9
2111 Female, age 85, right hemisphere 5.7
2287 Male, age 75, right hemisphere 5.4
Nucleus accumbens
nTPM: 5.6
1783 Male, age 74, unknown 5.9
2391 Female, age 94, left hemisphere 5.9
1806 Female, age 85, left hemisphere 5.8
2698 Female, age 72, unknown 5.8
2732 Male, age 80, right hemisphere 5.7
2824 Male, age 61, right hemisphere 5.7
1856 Female, age 91, right hemisphere 5.2
2286 Male, age 75, left hemisphere 4.8
Nucleus basalis of Meynert
nTPM: 6.1
2821 Male, age 75, both hemispheres 7.1
2484 Female, age 94, left hemisphere 5.9
2393 Male, age 80, right hemisphere 5.8
2569 Male, age 61, both hemispheres 5.7
Nucleus of the diagonal band
nTPM: 5.9
1812 Female, age 91, both hemispheres 7.0
1979 Male, age 74, unknown 5.7
2029 Male, age 61, right hemisphere 5.7
2195 Female, age 85, both hemispheres 5.7
2775 Male, age 80, right hemisphere 5.6
Olfactory tubercle
nTPM: 5.4
2487 Female, age 94, left hemisphere 6.0
1846 Male, age 80, right hemisphere 5.8
2856 Male, age 75, right hemisphere 5.0
1998 Female, age 91, both hemispheres 4.6
Putamen
nTPM: 5.7
2482 Female, age 94, left hemisphere 7.4
2466 Female, age 79, unknown 6.3
1838 Male, age 80, right hemisphere 5.7
1829 Male, age 74, unknown 5.6
2489 Female, age 72, unknown 5.6
1937 Female, age 91, right hemisphere 5.0
2647 Male, age 75, left hemisphere 4.5
Septal nuclei
nTPM: 5.9
2009 Female, age 91, both hemispheres 6.1
2199 Male, age 80, right hemisphere 6.1
2629 Female, age 94, right hemisphere 6.1
2394 Male, age 61, left hemisphere 6.0
1960 Male, age 74, unknown 5.7
2059 Female, age 85, both hemispheres 5.7
2031 Female, age 72, unknown 5.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 38.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 38.4
Samples: 246

Max nTPM: 213.9
Min nTPM: 3.7
Std nTPM: 33.2
Median nTPM: 28.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 213.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 197.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 166.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 160.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 149.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 131.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 131.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 129.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 128.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 127.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 125.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 29.8
Samples: 246

Max nTPM: 149.0
Min nTPM: 2.1
Std nTPM: 24.1
Median nTPM: 23.4
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 149.0
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 142.3
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 124.4
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 111.2
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 104.0
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 99.2
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 99.2
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 94.8
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 90.0
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 89.7
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 89.6
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Brain - Putamen (basal ganglia)
Average nTPM: 32.9
Samples: 205

Max nTPM: 214.2
Min nTPM: 5.5
Std nTPM: 25.4
Median nTPM: 25.9
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 214.2
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 116.8
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 111.9
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 105.9
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 102.1
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 95.1
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 91.0
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 90.1
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 85.6
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 83.0
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 78.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 10.1
FF:10164-103B2 76 years, female 10.1
Globus pallidus
Scaled Tags Per Million: 10.1
FF:10161-103A8 76 years, female 19.5
FF:10175-103C4 60 years, female 0.7
Nucleus accumbens
Scaled Tags Per Million: 2.5
FF:10037-101F1 23-56 years, mixed 2.5
Putamen
Scaled Tags Per Million: 1.4
FF:10176-103C5 60 years, female 1.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.