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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1728.1 nTPM
HPA:1728.1 nTPM
GTEx:1439.0 nTPM
FANTOM5:544.3 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1728.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1643.9
1827 Male, age 72, unknown 1692.0
1870 Female, age 42, unknown 1679.3
2411 Female, age 72, unknown 1666.3
2019 Male, age 18, unknown 1656.4
2666 Male, age 74, left hemisphere 1651.1
2219 Male, age 76, both hemispheres 1635.1
1833 Male, age 53, unknown 1634.8
2828 Female, age 72, unknown 1633.7
1830 Male, age 51, unknown 1620.0
2586 Male, age 75, left hemisphere 1569.9
Dorsal raphe nucleus
nTPM: 1641.7
2298 Female, age 72, unknown 1696.9
2750 Male, age 76, both hemispheres 1668.0
2047 Male, age 72, unknown 1648.0
1828 Male, age 53, unknown 1625.9
2016 Female, age 72, unknown 1569.8
Inferior colliculus
nTPM: 1661.3
2097 Female, age 72, unknown 1684.5
1848 Female, age 42, unknown 1672.1
1890 Male, age 53, unknown 1656.9
2849 Male, age 72, unknown 1631.7
Median raphe nucleus
nTPM: 1682.7
2220 Male, age 76, midline 1682.7
Pedunculopontine tegmental nucleus
nTPM: 1728.1
2338 Male, age 61, both hemispheres 1757.0
2334 Male, age 80, both hemispheres 1746.5
1921 Female, age 85, both hemispheres 1680.9
Periaquaductal grey, anterior
nTPM: 1659.5
1947 Male, age 18, unknown 1673.3
2502 Female, age 75, unknown 1668.3
1795 Male, age 51, unknown 1636.8
Periaquaductal grey, dorsal
nTPM: 1623.4
2850 Male, age 76, both hemispheres 1649.7
1840 Male, age 53, unknown 1618.4
1831 Male, age 72, unknown 1616.7
2464 Female, age 72, unknown 1608.6
Periaquaductal grey, lateral
nTPM: 1617.0
2272 Male, age 74, both hemispheres 1635.7
2053 Male, age 18, unknown 1623.1
2140 Male, age 76, both hemispheres 1592.3
Pretectal area
nTPM: 1694.3
1944 Female, age 72, unknown 1792.7
1816 Male, age 51, unknown 1787.8
1817 Female, age 42, unknown 1776.2
2007 Male, age 72, unknown 1767.1
1815 Male, age 53, unknown 1710.4
2224 Female, age 72, unknown 1682.1
2667 Female, age 75, unknown 1652.1
2273 Male, age 74, both hemispheres 1648.0
2825 Male, age 18, unknown 1617.4
2407 Male, age 75, both hemispheres 1614.5
2316 Male, age 76, right hemisphere 1588.5
Red nucleus
nTPM: 1657.2
2725 Female, age 75, unknown 1747.0
1821 Female, age 72, unknown 1702.9
2785 Male, age 18, unknown 1679.9
1865 Male, age 51, unknown 1677.8
2503 Female, age 72, unknown 1659.7
2588 Male, age 74, left hemisphere 1650.8
1954 Female, age 42, unknown 1649.9
2823 Male, age 76, right hemisphere 1645.2
1904 Male, age 53, unknown 1634.3
2769 Male, age 72, unknown 1626.8
2227 Male, age 72, unknown 1622.2
2584 Male, age 75, left hemisphere 1589.3
Substantia nigra
nTPM: 1673.2
1889 Female, age 72, unknown 1786.4
1941 Male, age 53, unknown 1767.1
1916 Female, age 42, unknown 1719.0
1851 Male, age 51, unknown 1681.3
2241 Male, age 72, unknown 1670.3
2699 Male, age 18, unknown 1645.0
2590 Female, age 75, unknown 1626.4
2665 Male, age 74, both hemispheres 1625.9
2409 Female, age 72, unknown 1609.0
2583 Male, age 75, right hemisphere 1601.9
Superior colliculus
nTPM: 1653.9
2087 Female, age 72, unknown 1713.1
2587 Male, age 74, left hemisphere 1708.1
2261 Male, age 18, unknown 1680.9
1895 Male, age 76, right hemisphere 1675.6
1796 Male, age 53, unknown 1661.9
1913 Female, age 42, unknown 1657.5
2668 Female, age 75, unknown 1635.7
1995 Male, age 72, unknown 1625.1
1839 Male, age 51, unknown 1619.0
2664 Male, age 75, both hemispheres 1561.9
Ventral tegmental area
nTPM: 1652.4
2218 Male, age 76, both hemispheres 1712.5
1915 Female, age 42, unknown 1680.7
2410 Female, age 72, unknown 1674.0
2223 Female, age 72, unknown 1637.1
1942 Male, age 51, unknown 1617.5
2021 Male, age 53, unknown 1592.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1439.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1439.0
Samples: 139

Max nTPM: 3498.6
Min nTPM: 871.4
Std nTPM: 357.5
Median nTPM: 1396.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 3498.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 3092.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 2424.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2337.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2333.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 2210.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 2039.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 1890.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 1870.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 1868.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1866.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 544.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 544.3
FF:10158-103A5 76 years, female 544.3

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